(7 nodes) CLOCK-BMAL transcription complex, and DNA photolyase network (Lipotes vexillifer)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLOCK	Circadian locomoter output cycles protein kaput isoform X1. (853 aa)
	PER2	Period circadian protein homolog 2. (1274 aa)
	CRY2	Cryptochrome-2. (593 aa)
	CSNK1D	Casein kinase I isoform delta isoform X1; Belongs to the protein kinase superfamily. (428 aa)
	CRY1	Cryptochrome-1. (587 aa)
	NPAS2	Neuronal PAS domain-containing protein 2. (806 aa)
	ARNTL	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3. (632 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL	CLOCK	A0A340YCS5	A0A340WTW6	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	Circadian locomoter output cycles protein kaput isoform X1.	0.978
ARNTL	CRY1	A0A340YCS5	A0A340XUA4	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	Cryptochrome-1.	0.994
ARNTL	CRY2	A0A340YCS5	A0A340X9J3	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	Cryptochrome-2.	0.998
ARNTL	CSNK1D	A0A340YCS5	A0A340XTE3	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	Casein kinase I isoform delta isoform X1; Belongs to the protein kinase superfamily.	0.968
ARNTL	NPAS2	A0A340YCS5	A0A340Y3W5	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	Neuronal PAS domain-containing protein 2.	0.967
ARNTL	PER2	A0A340YCS5	A0A340X1E5	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	Period circadian protein homolog 2.	0.987
CLOCK	ARNTL	A0A340WTW6	A0A340YCS5	Circadian locomoter output cycles protein kaput isoform X1.	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	0.978
CLOCK	CRY1	A0A340WTW6	A0A340XUA4	Circadian locomoter output cycles protein kaput isoform X1.	Cryptochrome-1.	0.976
CLOCK	CRY2	A0A340WTW6	A0A340X9J3	Circadian locomoter output cycles protein kaput isoform X1.	Cryptochrome-2.	0.983
CLOCK	CSNK1D	A0A340WTW6	A0A340XTE3	Circadian locomoter output cycles protein kaput isoform X1.	Casein kinase I isoform delta isoform X1; Belongs to the protein kinase superfamily.	0.966
CLOCK	NPAS2	A0A340WTW6	A0A340Y3W5	Circadian locomoter output cycles protein kaput isoform X1.	Neuronal PAS domain-containing protein 2.	0.910
CLOCK	PER2	A0A340WTW6	A0A340X1E5	Circadian locomoter output cycles protein kaput isoform X1.	Period circadian protein homolog 2.	0.972
CRY1	ARNTL	A0A340XUA4	A0A340YCS5	Cryptochrome-1.	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	0.994
CRY1	CLOCK	A0A340XUA4	A0A340WTW6	Cryptochrome-1.	Circadian locomoter output cycles protein kaput isoform X1.	0.976
CRY1	CRY2	A0A340XUA4	A0A340X9J3	Cryptochrome-1.	Cryptochrome-2.	0.985
CRY1	CSNK1D	A0A340XUA4	A0A340XTE3	Cryptochrome-1.	Casein kinase I isoform delta isoform X1; Belongs to the protein kinase superfamily.	0.956
CRY1	NPAS2	A0A340XUA4	A0A340Y3W5	Cryptochrome-1.	Neuronal PAS domain-containing protein 2.	0.980
CRY1	PER2	A0A340XUA4	A0A340X1E5	Cryptochrome-1.	Period circadian protein homolog 2.	0.969
CRY2	ARNTL	A0A340X9J3	A0A340YCS5	Cryptochrome-2.	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3.	0.998
CRY2	CLOCK	A0A340X9J3	A0A340WTW6	Cryptochrome-2.	Circadian locomoter output cycles protein kaput isoform X1.	0.983