(14 nodes) Proteasome regulatory particle network (Lipotes vexillifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSMD6	26S proteasome non-ATPase regulatory subunit 6 isoform X1. (389 aa)
	PSMC6	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (403 aa)
	LOC103091442	26S proteasome non-ATPase regulatory subunit 7-like. (322 aa)
	PSMD11	26S proteasome non-ATPase regulatory subunit 11. (422 aa)
	PSMC3	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (423 aa)
	PSMC5	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (406 aa)
	PSMC4	26S protease regulatory subunit 6B isoform X1; Belongs to the AAA ATPase family. (418 aa)
	LOC103082498	26S proteasome non-ATPase regulatory subunit 12-like isoform X1. (456 aa)
	PSMD14	26S proteasome non-ATPase regulatory subunit 14. (310 aa)
	PSMD4	26S proteasome non-ATPase regulatory subunit 4. (377 aa)
	PSMD13	26S proteasome non-ATPase regulatory subunit 13 isoform X1. (376 aa)
	PSMD3	26S proteasome non-ATPase regulatory subunit 3. (534 aa)
	PSMC2	LOW QUALITY PROTEIN: 26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (477 aa)
	PSMC1	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family. (440 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103082498	LOC103091442	A0A340XCU5	A0A340WK77	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 7-like.	0.999
LOC103082498	PSMC1	A0A340XCU5	A0A340YHK0	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family.	0.998
LOC103082498	PSMC2	A0A340XCU5	A0A340Y5W2	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	LOW QUALITY PROTEIN: 26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
LOC103082498	PSMC3	A0A340XCU5	A0A340X2L0	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
LOC103082498	PSMC4	A0A340XCU5	A0A340XBB0	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S protease regulatory subunit 6B isoform X1; Belongs to the AAA ATPase family.	0.997
LOC103082498	PSMC5	A0A340XCU5	A0A340X5J6	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
LOC103082498	PSMC6	A0A340XCU5	A0A340WG60	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.999
LOC103082498	PSMD11	A0A340XCU5	A0A340WZF0	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 11.	0.999
LOC103082498	PSMD13	A0A340XCU5	A0A340XXU2	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 13 isoform X1.	0.999
LOC103082498	PSMD14	A0A340XCU5	A0A340XCX0	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 14.	0.999
LOC103082498	PSMD3	A0A340XCU5	A0A340XYD0	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 3.	0.999
LOC103082498	PSMD4	A0A340XCU5	A0A340XFX8	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 4.	0.998
LOC103082498	PSMD6	A0A340XCU5	A0A340WEZ2	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	26S proteasome non-ATPase regulatory subunit 6 isoform X1.	0.999
LOC103091442	LOC103082498	A0A340WK77	A0A340XCU5	26S proteasome non-ATPase regulatory subunit 7-like.	26S proteasome non-ATPase regulatory subunit 12-like isoform X1.	0.999
LOC103091442	PSMC1	A0A340WK77	A0A340YHK0	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family.	0.998
LOC103091442	PSMC2	A0A340WK77	A0A340Y5W2	26S proteasome non-ATPase regulatory subunit 7-like.	LOW QUALITY PROTEIN: 26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.999
LOC103091442	PSMC3	A0A340WK77	A0A340X2L0	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
LOC103091442	PSMC4	A0A340WK77	A0A340XBB0	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 6B isoform X1; Belongs to the AAA ATPase family.	0.997
LOC103091442	PSMC5	A0A340WK77	A0A340X5J6	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
LOC103091442	PSMC6	A0A340WK77	A0A340WG60	26S proteasome non-ATPase regulatory subunit 7-like.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.998