(5 nodes) Leucine-rich repeat, cysteine-containing subtype, and F-box only protein network (Lipotes vexillifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FBXL7	F-box/LRR-repeat protein 7 isoform X2. (491 aa)
	FBXL16	F-box/LRR-repeat protein 16. (483 aa)
	FBXO6	F-box only protein 6. (265 aa)
	FBXL6	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6. (547 aa)
	FBXO16	F-box only protein 16. (340 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBXL16	FBXL6	A0A340WW92	A0A340XTJ2	F-box/LRR-repeat protein 16.	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6.	0.513
FBXL16	FBXL7	A0A340WW92	A0A340WQ80	F-box/LRR-repeat protein 16.	F-box/LRR-repeat protein 7 isoform X2.	0.513
FBXL16	FBXO16	A0A340WW92	A0A340Y446	F-box/LRR-repeat protein 16.	F-box only protein 16.	0.784
FBXL16	FBXO6	A0A340WW92	A0A340XPC8	F-box/LRR-repeat protein 16.	F-box only protein 6.	0.556
FBXL6	FBXL16	A0A340XTJ2	A0A340WW92	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6.	F-box/LRR-repeat protein 16.	0.513
FBXL6	FBXO16	A0A340XTJ2	A0A340Y446	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6.	F-box only protein 16.	0.649
FBXL6	FBXO6	A0A340XTJ2	A0A340XPC8	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6.	F-box only protein 6.	0.564
FBXL7	FBXL16	A0A340WQ80	A0A340WW92	F-box/LRR-repeat protein 7 isoform X2.	F-box/LRR-repeat protein 16.	0.513
FBXL7	FBXO16	A0A340WQ80	A0A340Y446	F-box/LRR-repeat protein 7 isoform X2.	F-box only protein 16.	0.649
FBXL7	FBXO6	A0A340WQ80	A0A340XPC8	F-box/LRR-repeat protein 7 isoform X2.	F-box only protein 6.	0.564
FBXO16	FBXL16	A0A340Y446	A0A340WW92	F-box only protein 16.	F-box/LRR-repeat protein 16.	0.784
FBXO16	FBXL6	A0A340Y446	A0A340XTJ2	F-box only protein 16.	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6.	0.649
FBXO16	FBXL7	A0A340Y446	A0A340WQ80	F-box only protein 16.	F-box/LRR-repeat protein 7 isoform X2.	0.649
FBXO16	FBXO6	A0A340Y446	A0A340XPC8	F-box only protein 16.	F-box only protein 6.	0.769
FBXO6	FBXL16	A0A340XPC8	A0A340WW92	F-box only protein 6.	F-box/LRR-repeat protein 16.	0.556
FBXO6	FBXL6	A0A340XPC8	A0A340XTJ2	F-box only protein 6.	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6.	0.564
FBXO6	FBXL7	A0A340XPC8	A0A340WQ80	F-box only protein 6.	F-box/LRR-repeat protein 7 isoform X2.	0.564
FBXO6	FBXO16	A0A340XPC8	A0A340Y446	F-box only protein 6.	F-box only protein 16.	0.769