9 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	XRCC5	X-ray repair cross-complementing protein 5. (733 aa)
	HMBOX1	Homeobox-containing protein 1 isoform X1. (443 aa)
	PURA	Transcriptional activator protein Pur-alpha isoform X1. (322 aa)
	RAD50	DNA repair protein RAD50 isoform X1. (1312 aa)
	ZBTB48	Zinc finger and BTB domain-containing protein 48. (688 aa)
	XRCC6	X-ray repair cross-complementing protein 6 isoform X1. (609 aa)
	TERF1	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (437 aa)
	TERF2	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (539 aa)
	APEX1	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (320 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APEX1	XRCC5	A0A340XQX3	A0A340XUW7	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	X-ray repair cross-complementing protein 5.	0.436
HMBOX1	ZBTB48	A0A340Y171	A0A340X0C8	Homeobox-containing protein 1 isoform X1.	Zinc finger and BTB domain-containing protein 48.	0.617
RAD50	TERF1	A0A340XJ04	A0A340WXK3	DNA repair protein RAD50 isoform X1.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.495
RAD50	TERF2	A0A340XJ04	A0A340WQR7	DNA repair protein RAD50 isoform X1.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.769
RAD50	XRCC5	A0A340XJ04	A0A340XUW7	DNA repair protein RAD50 isoform X1.	X-ray repair cross-complementing protein 5.	0.774
RAD50	XRCC6	A0A340XJ04	A0A340WY81	DNA repair protein RAD50 isoform X1.	X-ray repair cross-complementing protein 6 isoform X1.	0.919
TERF1	RAD50	A0A340WXK3	A0A340XJ04	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	DNA repair protein RAD50 isoform X1.	0.495
TERF1	TERF2	A0A340WXK3	A0A340WQR7	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.772
TERF2	RAD50	A0A340WQR7	A0A340XJ04	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	DNA repair protein RAD50 isoform X1.	0.769
TERF2	TERF1	A0A340WQR7	A0A340WXK3	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.772
TERF2	XRCC6	A0A340WQR7	A0A340WY81	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	X-ray repair cross-complementing protein 6 isoform X1.	0.581
TERF2	ZBTB48	A0A340WQR7	A0A340X0C8	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	Zinc finger and BTB domain-containing protein 48.	0.500
XRCC5	APEX1	A0A340XUW7	A0A340XQX3	X-ray repair cross-complementing protein 5.	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	0.436
XRCC5	RAD50	A0A340XUW7	A0A340XJ04	X-ray repair cross-complementing protein 5.	DNA repair protein RAD50 isoform X1.	0.774
XRCC5	XRCC6	A0A340XUW7	A0A340WY81	X-ray repair cross-complementing protein 5.	X-ray repair cross-complementing protein 6 isoform X1.	0.999
XRCC6	RAD50	A0A340WY81	A0A340XJ04	X-ray repair cross-complementing protein 6 isoform X1.	DNA repair protein RAD50 isoform X1.	0.919
XRCC6	TERF2	A0A340WY81	A0A340WQR7	X-ray repair cross-complementing protein 6 isoform X1.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.581
XRCC6	XRCC5	A0A340WY81	A0A340XUW7	X-ray repair cross-complementing protein 6 isoform X1.	X-ray repair cross-complementing protein 5.	0.999
ZBTB48	HMBOX1	A0A340X0C8	A0A340Y171	Zinc finger and BTB domain-containing protein 48.	Homeobox-containing protein 1 isoform X1.	0.617
ZBTB48	TERF2	A0A340X0C8	A0A340WQR7	Zinc finger and BTB domain-containing protein 48.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.500