44 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103080659	Protein phosphatase 1 regulatory subunit. (300 aa)
	PRKAG3	5'-AMP-activated protein kinase subunit gamma-3 isoform X3. (482 aa)
	PPP1CC	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (337 aa)
	PYGL	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (851 aa)
	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial. (421 aa)
	GSK3B	Glycogen synthase kinase-3 beta isoform X1; Belongs to the protein kinase superfamily. (433 aa)
	AGL	Glycogen debranching enzyme. (1532 aa)
	GYS2	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (701 aa)
	PGM2	Phosphoglucomutase-2. (616 aa)
	G6PC	Glucose-6-phosphatase; Belongs to the glucose-6-phosphatase family. (357 aa)
	PPP1CA	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
	PHKB	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. Belongs to the phosphorylase b kinase regulatory chain family. (972 aa)
	EPM2A	Laforin. (331 aa)
	PHKG1	Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform; Belongs to the protein kinase superfamily. (387 aa)
	LOC103075354	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. Belongs to the phosphorylase b kinase regulatory chain family. (345 aa)
	PHKG2	Phosphorylase b kinase gamma catalytic chain, liver/testis isoform; Belongs to the protein kinase superfamily. (406 aa)
	LOC103072565	Isoamylase 3, chloroplastic-like. (717 aa)
	PCDH12	Protocadherin-12. (1198 aa)
	STK40	Serine/threonine-protein kinase 40 isoform X2. (441 aa)
	SLC37A4	Glucose-6-phosphate translocase isoform X1. (450 aa)
	STBD1	Starch-binding domain-containing protein 1. (356 aa)
	LOC103086084	LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like. (375 aa)
	GSK3A	Glycogen synthase kinase-3 alpha; Belongs to the protein kinase superfamily. (483 aa)
	NHLRC1	E3 ubiquitin-protein ligase NHLRC1. (395 aa)
	LEPR	Leptin receptor isoform X1. (1165 aa)
	PYGM	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (842 aa)
	GAA	LOW QUALITY PROTEIN: lysosomal alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family. (947 aa)
	GYG2	Glycogenin-2. (489 aa)
	GYS1	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (738 aa)
	RB1CC1	RB1-inducible coiled-coil protein 1. (1589 aa)
	EPM2AIP1	EPM2A-interacting protein 1. (608 aa)
	NR1D1	Nuclear receptor subfamily 1 group D member 1. (613 aa)
	UGP2	UTP--glucose-1-phosphate uridylyltransferase. (508 aa)
	PHKA1	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. (1240 aa)
	LOC103072266	General transcription factor II-I repeat domain-containing protein 2-like. (948 aa)
	PRKAG2	5'-AMP-activated protein kinase subunit gamma-2 isoform X1. (569 aa)
	PHKA2	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. (1240 aa)
	IL6ST	Interleukin-6 receptor subunit beta isoform X1. (918 aa)
	LOC103072723	1,4-alpha-glucan-branching enzyme-like. (783 aa)
	GYG1	Glycogenin-1 isoform X1. (350 aa)
	LOC103081475	Protein phosphatase 1 regulatory subunit. (234 aa)
	PPP1R3C	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown. (317 aa)
	PPP1CB	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
	PYGB	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (847 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACADM	PYGL	A0A340WJZ2	A0A340WI13	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.443
AGL	EPM2A	A0A340WPU5	A0A340WTI3	Glycogen debranching enzyme.	Laforin.	0.570
AGL	GYG1	A0A340WPU5	A0A340YCH1	Glycogen debranching enzyme.	Glycogenin-1 isoform X1.	0.964
AGL	GYG2	A0A340WPU5	A0A340XNE8	Glycogen debranching enzyme.	Glycogenin-2.	0.941
AGL	GYS1	A0A340WPU5	A0A340XPZ3	Glycogen debranching enzyme.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.929
AGL	GYS2	A0A340WPU5	A0A340WR38	Glycogen debranching enzyme.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.917
AGL	LOC103072565	A0A340WPU5	A0A340X200	Glycogen debranching enzyme.	Isoamylase 3, chloroplastic-like.	0.970
AGL	LOC103072723	A0A340WPU5	A0A340YC08	Glycogen debranching enzyme.	1,4-alpha-glucan-branching enzyme-like.	0.980
AGL	LOC103080659	A0A340WPU5	A0A340YE19	Glycogen debranching enzyme.	Protein phosphatase 1 regulatory subunit.	0.428
AGL	LOC103081475	A0A340WPU5	A0A340YCR5	Glycogen debranching enzyme.	Protein phosphatase 1 regulatory subunit.	0.428
AGL	NHLRC1	A0A340WPU5	A0A340XIT1	Glycogen debranching enzyme.	E3 ubiquitin-protein ligase NHLRC1.	0.415
AGL	PGM2	A0A340WPU5	A0A340WR95	Glycogen debranching enzyme.	Phosphoglucomutase-2.	0.912
AGL	PHKA1	A0A340WPU5	A0A340Y2J1	Glycogen debranching enzyme.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.477
AGL	PHKG1	A0A340WPU5	A0A340WYK7	Glycogen debranching enzyme.	Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform; Belongs to the protein kinase superfamily.	0.580
AGL	PPP1R3C	A0A340WPU5	A0A340YFD5	Glycogen debranching enzyme.	Protein phosphatase 1 regulatory subunit 3C; Acts as a glycogen-targeting subunit for PP1 and regulates its activity. Activates glycogen synthase, reduces glycogen phosphorylase activity and limits glycogen breakdown.	0.485
AGL	PYGB	A0A340WPU5	A0A340YJE6	Glycogen debranching enzyme.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.996
AGL	PYGL	A0A340WPU5	A0A340WI13	Glycogen debranching enzyme.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.997
AGL	PYGM	A0A340WPU5	A0A340XL07	Glycogen debranching enzyme.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.997
AGL	STBD1	A0A340WPU5	A0A340X660	Glycogen debranching enzyme.	Starch-binding domain-containing protein 1.	0.644
AGL	UGP2	A0A340WPU5	A0A340XYC5	Glycogen debranching enzyme.	UTP--glucose-1-phosphate uridylyltransferase.	0.942