STRINGSTRING
TCEB3 TCEB3 POLRMT POLRMT TAF8 TAF8 GTF2F1 GTF2F1 SMARCA4 SMARCA4 GTF2A2 GTF2A2 TBP TBP NCOA6 NCOA6 CCNH CCNH LOC103088598 LOC103088598 SMARCB1 SMARCB1 PTRF PTRF LOC103074978 LOC103074978 GTF2E1 GTF2E1 TTF1 TTF1 TBPL1 TBPL1 GTF3C5 GTF3C5 LOC103080562 LOC103080562 GTF2H5 GTF2H5 TAF2 TAF2 TBPL2 TBPL2 BRF2 BRF2 GCC1 GCC1 LOC103088940 LOC103088940 SNAPC5 SNAPC5 TAF9B TAF9B POLR3H POLR3H LOC103084951 LOC103084951 TAF1C TAF1C CRCP CRCP GTF3C1 GTF3C1 GTF2A1L GTF2A1L POLR2I POLR2I GTF2A1 GTF2A1 LOC103081667 LOC103081667 LOC103076354 LOC103076354 MED8 MED8 TAF5 TAF5 TAF7L TAF7L DR1 DR1 RRN3 RRN3 GTF2B GTF2B TAF6 TAF6 GTF3C4 GTF3C4 MAZ MAZ TAF11 TAF11 BAZ2A BAZ2A GTF2F2 GTF2F2 TAF3 TAF3 PNO1 PNO1 SMARCA5 SMARCA5 POLR2G POLR2G PIH1D1 PIH1D1 TAF12 TAF12 TAF4 TAF4 TAF6L TAF6L TAF10 TAF10 TAF1 TAF1 ERCC3 ERCC3 POLR2D POLR2D LOC103074048 LOC103074048 POLR1E POLR1E BRF1 BRF1 TAF9 TAF9 CDK7 CDK7 BDP1 BDP1 UBTF UBTF RSF1 RSF1 TWISTNB TWISTNB TFB2M TFB2M TAF1B TAF1B TAF4B TAF4B LIPE LIPE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCEB3Transcription elongation factor B polypeptide 3. (773 aa)
POLRMTDNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1232 aa)
TAF8LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 8. (296 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
SMARCA4Transcription activator BRG1. (1619 aa)
GTF2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
TBPTATA-box-binding protein isoform X1. (329 aa)
NCOA6Nuclear receptor coactivator 6 isoform X1. (2039 aa)
CCNHcyclin-H isoform X1; Belongs to the cyclin family. (330 aa)
LOC103088598rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (266 aa)
SMARCB1SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (385 aa)
PTRFPolymerase I and transcript release factor. (390 aa)
LOC103074978Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
GTF2E1General transcription factor IIE subunit 1. (438 aa)
TTF1Transcription termination factor 1. (762 aa)
TBPL1TATA box-binding protein-like protein 1. (186 aa)
GTF3C5General transcription factor 3C polypeptide 5 isoform X2. (527 aa)
LOC103080562rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (334 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
TAF2Transcription initiation factor TFIID subunit 2. (1103 aa)
TBPL2TATA box-binding protein-like protein 2. (343 aa)
BRF2Transcription factor IIIB 50 kDa subunit. (424 aa)
GCC1GRIP and coiled-coil domain-containing protein 1. (775 aa)
LOC103088940Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (306 aa)
SNAPC5snRNA-activating protein complex subunit 5. (97 aa)
TAF9BTranscription initiation factor TFIID subunit 9B. (250 aa)
POLR3HDNA-directed RNA polymerase III subunit RPC8 isoform X2. (204 aa)
LOC103084951Transcription initiation factor TFIID subunit 7-like. (349 aa)
TAF1CTATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1. (844 aa)
CRCPDNA-directed RNA polymerase III subunit RPC9. (158 aa)
GTF3C1General transcription factor 3C polypeptide 1. (2115 aa)
GTF2A1LLOW QUALITY PROTEIN: general transcription factor IIA, 1-like. (479 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
GTF2A1Transcription initiation factor IIA subunit 1 isoform X2. (380 aa)
LOC103081667Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC103076354Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
MED8Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (310 aa)
TAF5Transcription initiation factor TFIID subunit 5 isoform X1. (800 aa)
TAF7LTranscription initiation factor TFIID subunit 7-like. (469 aa)
DR1Protein Dr1 isoform X1. (176 aa)
RRN3RNA polymerase I-specific transcription initiation factor RRN3. (651 aa)
GTF2BTranscription initiation factor IIB. (316 aa)
TAF6Transcription initiation factor TFIID subunit 6. (678 aa)
GTF3C4General transcription factor 3C polypeptide 4. (817 aa)
MAZMyc-associated zinc finger protein isoform X1. (495 aa)
TAF11Transcription initiation factor TFIID subunit 11 isoform X1. (211 aa)
BAZ2ABromodomain adjacent to zinc finger domain protein 2A. (1911 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
TAF3Transcription initiation factor TFIID subunit 3. (920 aa)
PNO1RNA-binding protein PNO1. (252 aa)
SMARCA5SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (1052 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (199 aa)
PIH1D1PIH1 domain-containing protein 1 isoform X1. (315 aa)
TAF12Transcription initiation factor TFIID subunit 12 isoform X1. (161 aa)
TAF4Transcription initiation factor TFIID subunit 4. (883 aa)
TAF6LTATA-box binding protein associated factor 6 like. (626 aa)
TAF10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (218 aa)
TAF1Transcription initiation factor TFIID subunit 1-like. (1452 aa)
ERCC3TFIIH basal transcription factor complex helicase XPB subunit. (782 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4. (142 aa)
LOC103074048Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (134 aa)
POLR1EDNA-directed RNA polymerase I subunit RPA49 isoform X1. (422 aa)
BRF1LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa subunit. (686 aa)
TAF9Transcription initiation factor TFIID subunit 9 isoform X1. (265 aa)
CDK7Cyclin-dependent kinase 7 isoform X1; Belongs to the protein kinase superfamily. (353 aa)
BDP1Transcription factor TFIIIB component B'' homolog. (2411 aa)
UBTFNucleolar transcription factor 1 isoform X1. (757 aa)
RSF1LOW QUALITY PROTEIN: remodeling and spacing factor 1. (1440 aa)
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (329 aa)
TFB2MrRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (397 aa)
TAF1BTATA box-binding protein-associated factor RNA polymerase I subunit B. (590 aa)
TAF4BTranscription initiation factor TFIID subunit 4B isoform X1. (861 aa)
LIPEHormone-sensitive lipase. (755 aa)
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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