37 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PER3	Period circadian protein homolog 3. (1145 aa)
	FBXL12	F-box/LRR-repeat protein 12. (326 aa)
	CRTC1	CREB-regulated transcription coactivator 1 isoform X1. (655 aa)
	FBXL21	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 21. (434 aa)
	NR2F6	Nuclear receptor subfamily 2 group F member 6 isoform X1. (413 aa)
	LOC103090855	Deoxyribodipyrimidine photo-lyase-like. (434 aa)
	CRY1	Cryptochrome-1. (587 aa)
	FBXL6	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 6. (547 aa)
	CHRM1	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins. (459 aa)
	RBM4B	RNA-binding protein 4B isoform X1. (359 aa)
	RBM4	RNA-binding protein 4 isoform X1. (363 aa)
	PER1	Period circadian protein homolog 1. (1273 aa)
	GNA11	Guanine nucleotide-binding protein subunit alpha-11. (359 aa)
	GNAQ	Guanine nucleotide-binding protein G(Q) subunit alpha. (359 aa)
	FBXL8	F-box/LRR-repeat protein 8. (374 aa)
	ID2	DNA-binding protein inhibitor ID-2. (134 aa)
	TP53	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (387 aa)
	ATOH7	Protein atonal homolog 7. (152 aa)
	LOC103086084	LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like. (375 aa)
	CRY2	Cryptochrome-2. (593 aa)
	CRTC2	CREB-regulated transcription coactivator 2. (692 aa)
	SOX14	Transcription factor SOX-14. (240 aa)
	USP2	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (603 aa)
	PER2	Period circadian protein homolog 2. (1274 aa)
	BHLHE40	Class E basic helix-loop-helix protein 40. (412 aa)
	SIK1	Serine/threonine-protein kinase SIK1. (784 aa)
	FBXL17	F-box/LRR-repeat protein 17. (577 aa)
	PPP1CA	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
	OPN5	Opsin-5; Belongs to the G-protein coupled receptor 1 family. (353 aa)
	PML	Protein PML. (848 aa)
	PPP1CC	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (337 aa)
	PPP1CB	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
	LOC103085653	Period circadian protein homolog 1-like. (220 aa)
	FBXL3	F-box/LRR-repeat protein 3 isoform X1. (429 aa)
	FBXL22	F-box and leucine-rich protein 22. (226 aa)
	PDE6B	Phosphodiesterase. (856 aa)
	PHLPP1	PH domain leucine-rich repeat-containing protein phosphatase 1. (1693 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BHLHE40	CRY1	A0A340X1B4	A0A340XUA4	Class E basic helix-loop-helix protein 40.	Cryptochrome-1.	0.414
BHLHE40	CRY2	A0A340X1B4	A0A340X9J3	Class E basic helix-loop-helix protein 40.	Cryptochrome-2.	0.409
BHLHE40	LOC103090855	A0A340X1B4	A0A340XUT2	Class E basic helix-loop-helix protein 40.	Deoxyribodipyrimidine photo-lyase-like.	0.414
BHLHE40	PER2	A0A340X1B4	A0A340X1E5	Class E basic helix-loop-helix protein 40.	Period circadian protein homolog 2.	0.453
BHLHE40	PER3	A0A340X1B4	A0A340WV88	Class E basic helix-loop-helix protein 40.	Period circadian protein homolog 3.	0.436
CHRM1	GNA11	A0A340XS61	A0A340XG36	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.	Guanine nucleotide-binding protein subunit alpha-11.	0.961
CHRM1	GNAQ	A0A340XS61	A0A340XET8	Muscarinic acetylcholine receptor; The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.950
CRTC1	CRTC2	A0A340XI85	A0A340X935	CREB-regulated transcription coactivator 1 isoform X1.	CREB-regulated transcription coactivator 2.	0.903
CRTC2	CRTC1	A0A340X935	A0A340XI85	CREB-regulated transcription coactivator 2.	CREB-regulated transcription coactivator 1 isoform X1.	0.903
CRTC2	SIK1	A0A340X935	A0A340WWH0	CREB-regulated transcription coactivator 2.	Serine/threonine-protein kinase SIK1.	0.905
CRY1	BHLHE40	A0A340XUA4	A0A340X1B4	Cryptochrome-1.	Class E basic helix-loop-helix protein 40.	0.414
CRY1	CRY2	A0A340XUA4	A0A340X9J3	Cryptochrome-1.	Cryptochrome-2.	0.985
CRY1	FBXL21	A0A340XUA4	A0A340XJ35	Cryptochrome-1.	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 21.	0.654
CRY1	FBXL3	A0A340XUA4	A0A340Y575	Cryptochrome-1.	F-box/LRR-repeat protein 3 isoform X1.	0.984
CRY1	LOC103085653	A0A340XUA4	A0A340Y6C7	Cryptochrome-1.	Period circadian protein homolog 1-like.	0.729
CRY1	PER1	A0A340XUA4	A0A340XFR5	Cryptochrome-1.	Period circadian protein homolog 1.	0.729
CRY1	PER2	A0A340XUA4	A0A340X1E5	Cryptochrome-1.	Period circadian protein homolog 2.	0.969
CRY1	PER3	A0A340XUA4	A0A340WV88	Cryptochrome-1.	Period circadian protein homolog 3.	0.827
CRY2	BHLHE40	A0A340X9J3	A0A340X1B4	Cryptochrome-2.	Class E basic helix-loop-helix protein 40.	0.409
CRY2	CRY1	A0A340X9J3	A0A340XUA4	Cryptochrome-2.	Cryptochrome-1.	0.985