40 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103082397	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	NOP14	Nucleolar protein 14. (851 aa)
	PDCD11	LOW QUALITY PROTEIN: protein RRP5 homolog. (1869 aa)
	EMG1	Ribosomal RNA small subunit methyltransferase NEP1. (244 aa)
	NOP58	Nucleolar protein 58 isoform X1. (537 aa)
	RPS7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3. (184 aa)
	WDR46	WD repeat-containing protein 46 isoform X1. (611 aa)
	NOP56	Nucleolar protein 56. (595 aa)
	UTP20	LOW QUALITY PROTEIN: small subunit processome component 20 homolog. (2783 aa)
	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4. (291 aa)
	DCAF13	DDB1- and CUL4-associated factor 13. (445 aa)
	XRCC5	X-ray repair cross-complementing protein 5. (733 aa)
	NOL6	Nucleolar protein 6. (1146 aa)
	NOC4L	LOW QUALITY PROTEIN: nucleolar complex protein 4 homolog. (519 aa)
	PRKDC	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family. (4131 aa)
	WDR3	WD repeat-containing protein 3. (946 aa)
	FCF1	rRNA-processing protein FCF1 homolog. (198 aa)
	FBL	rRNA 2'-O-methyltransferase fibrillarin isoform X1. (337 aa)
	NOL10	Nucleolar protein 10 isoform X1. (688 aa)
	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (679 aa)
	UBE4A	Ubiquitin conjugation factor E4 A isoform X1. (1083 aa)
	UTP11L	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
	TBL3	Transducin beta-like protein 3. (797 aa)
	HEATR1	HEAT repeat-containing protein 1. (2184 aa)
	NHP2L1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (132 aa)
	PWP2	Periodic tryptophan protein 2 homolog. (912 aa)
	RRP9	U3 small nucleolar RNA-interacting protein 2. (475 aa)
	UTP6	U3 small nucleolar RNA-associated protein 6 homolog. (598 aa)
	DIEXF	Digestive organ expansion factor homolog. (752 aa)
	UTP23	rRNA-processing protein UTP23 homolog. (204 aa)
	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A isoform X1. (772 aa)
	CIRH1A	Cirhin isoform X1. (691 aa)
	WDR36	WD repeat-containing protein 36. (895 aa)
	KRR1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
	NGDN	Neuroguidin. (315 aa)
	LOC103077133	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1-like. (332 aa)
	UTP18	U3 small nucleolar RNA-associated protein 18 homolog. (551 aa)
	HUNK	LOW QUALITY PROTEIN: hormonally up-regulated neu tumor-associated kinase. (714 aa)
	UTP3	Something about silencing protein 10. (471 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIRH1A	DCAF13	A0A340WSF2	A0A340XVI8	Cirhin isoform X1.	DDB1- and CUL4-associated factor 13.	0.997
CIRH1A	DIEXF	A0A340WSF2	A0A340WXN9	Cirhin isoform X1.	Digestive organ expansion factor homolog.	0.931
CIRH1A	EMG1	A0A340WSF2	A0A340YAG7	Cirhin isoform X1.	Ribosomal RNA small subunit methyltransferase NEP1.	0.991
CIRH1A	FBL	A0A340WSF2	A0A340XAX3	Cirhin isoform X1.	rRNA 2'-O-methyltransferase fibrillarin isoform X1.	0.963
CIRH1A	FCF1	A0A340WSF2	A0A340XKL5	Cirhin isoform X1.	rRNA-processing protein FCF1 homolog.	0.978
CIRH1A	HEATR1	A0A340WSF2	A0A340WZB1	Cirhin isoform X1.	HEAT repeat-containing protein 1.	0.999
CIRH1A	IMP3	A0A340WSF2	A0A340Y6B9	Cirhin isoform X1.	U3 small nucleolar ribonucleoprotein protein IMP3.	0.982
CIRH1A	IMP4	A0A340WSF2	A0A340XXA4	Cirhin isoform X1.	U3 small nucleolar ribonucleoprotein protein IMP4.	0.997
CIRH1A	KRR1	A0A340WSF2	A0A340WME2	Cirhin isoform X1.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.996
CIRH1A	LOC103077133	A0A340WSF2	A0A340WLH5	Cirhin isoform X1.	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1-like.	0.959
CIRH1A	LOC103082397	A0A340WSF2	A0A340YHR7	Cirhin isoform X1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.960
CIRH1A	MPHOSPH10	A0A340WSF2	A0A340X8W4	Cirhin isoform X1.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.998
CIRH1A	NGDN	A0A340WSF2	A0A340WLP4	Cirhin isoform X1.	Neuroguidin.	0.993
CIRH1A	NHP2L1	A0A340WSF2	A0A340WYL5	Cirhin isoform X1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.960
CIRH1A	NOC4L	A0A340WSF2	A0A340XU42	Cirhin isoform X1.	LOW QUALITY PROTEIN: nucleolar complex protein 4 homolog.	0.997
CIRH1A	NOL10	A0A340WSF2	A0A340XA83	Cirhin isoform X1.	Nucleolar protein 10 isoform X1.	0.994
CIRH1A	NOL6	A0A340WSF2	A0A340XUT0	Cirhin isoform X1.	Nucleolar protein 6.	0.998
CIRH1A	NOP14	A0A340WSF2	A0A340YFK7	Cirhin isoform X1.	Nucleolar protein 14.	0.992
CIRH1A	NOP56	A0A340WSF2	A0A340Y1E3	Cirhin isoform X1.	Nucleolar protein 56.	0.997
CIRH1A	NOP58	A0A340WSF2	A0A340Y9Y0	Cirhin isoform X1.	Nucleolar protein 58 isoform X1.	0.998