10 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103075606	Ras-related protein Rap-2a-like. (183 aa)
	LOC103088976	Ras-related protein Rap-1b-like isoform X1. (165 aa)
	RAP2A	Ras-related protein Rap-2a. (105 aa)
	RAPGEF3	Rap guanine nucleotide exchange factor 3. (923 aa)
	RAP2C	Ras-related protein Rap-2c isoform X1. (183 aa)
	RAP1B	Ras-related protein Rap-1b isoform X1. (184 aa)
	LOC103083128	Ras-related protein Rap-2a-like. (200 aa)
	SGSM3	Small G protein signaling modulator 3. (782 aa)
	RAP1A	Ras-related protein Rap-1A. (184 aa)
	RAPGEF2	Rap guanine nucleotide exchange factor 2. (1483 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103075606	RAPGEF2	A0A340WHR3	A0A340WI30	Ras-related protein Rap-2a-like.	Rap guanine nucleotide exchange factor 2.	0.451
LOC103075606	RAPGEF3	A0A340WHR3	A0A340XXH9	Ras-related protein Rap-2a-like.	Rap guanine nucleotide exchange factor 3.	0.455
LOC103083128	RAP2C	A0A340X8X8	A0A340XU96	Ras-related protein Rap-2a-like.	Ras-related protein Rap-2c isoform X1.	0.901
LOC103083128	RAPGEF2	A0A340X8X8	A0A340WI30	Ras-related protein Rap-2a-like.	Rap guanine nucleotide exchange factor 2.	0.942
LOC103083128	RAPGEF3	A0A340X8X8	A0A340XXH9	Ras-related protein Rap-2a-like.	Rap guanine nucleotide exchange factor 3.	0.455
LOC103088976	RAP1A	A0A340YCQ3	A0A340WNW2	Ras-related protein Rap-1b-like isoform X1.	Ras-related protein Rap-1A.	0.984
LOC103088976	RAP1B	A0A340YCQ3	A0A340XQJ6	Ras-related protein Rap-1b-like isoform X1.	Ras-related protein Rap-1b isoform X1.	0.900
LOC103088976	RAPGEF2	A0A340YCQ3	A0A340WI30	Ras-related protein Rap-1b-like isoform X1.	Rap guanine nucleotide exchange factor 2.	0.963
LOC103088976	RAPGEF3	A0A340YCQ3	A0A340XXH9	Ras-related protein Rap-1b-like isoform X1.	Rap guanine nucleotide exchange factor 3.	0.960
RAP1A	LOC103088976	A0A340WNW2	A0A340YCQ3	Ras-related protein Rap-1A.	Ras-related protein Rap-1b-like isoform X1.	0.984
RAP1A	RAP1B	A0A340WNW2	A0A340XQJ6	Ras-related protein Rap-1A.	Ras-related protein Rap-1b isoform X1.	0.984
RAP1A	RAPGEF2	A0A340WNW2	A0A340WI30	Ras-related protein Rap-1A.	Rap guanine nucleotide exchange factor 2.	0.963
RAP1A	RAPGEF3	A0A340WNW2	A0A340XXH9	Ras-related protein Rap-1A.	Rap guanine nucleotide exchange factor 3.	0.989
RAP1B	LOC103088976	A0A340XQJ6	A0A340YCQ3	Ras-related protein Rap-1b isoform X1.	Ras-related protein Rap-1b-like isoform X1.	0.900
RAP1B	RAP1A	A0A340XQJ6	A0A340WNW2	Ras-related protein Rap-1b isoform X1.	Ras-related protein Rap-1A.	0.984
RAP1B	RAPGEF2	A0A340XQJ6	A0A340WI30	Ras-related protein Rap-1b isoform X1.	Rap guanine nucleotide exchange factor 2.	0.963
RAP1B	RAPGEF3	A0A340XQJ6	A0A340XXH9	Ras-related protein Rap-1b isoform X1.	Rap guanine nucleotide exchange factor 3.	0.960
RAP2A	RAPGEF2	A0A340XYY2	A0A340WI30	Ras-related protein Rap-2a.	Rap guanine nucleotide exchange factor 2.	0.451
RAP2A	RAPGEF3	A0A340XYY2	A0A340XXH9	Ras-related protein Rap-2a.	Rap guanine nucleotide exchange factor 3.	0.455
RAP2C	LOC103083128	A0A340XU96	A0A340X8X8	Ras-related protein Rap-2c isoform X1.	Ras-related protein Rap-2a-like.	0.901