19 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZMPSTE24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (475 aa)
	NOS1AP	Uncharacterized protein C1orf226 homolog isoform X1. (767 aa)
	SCN4B	Sodium channel subunit beta-4. (228 aa)
	KCNH6	LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily H member 6. (904 aa)
	AKAP9	A-kinase anchor protein 9. (3874 aa)
	KCNE4	Potassium voltage-gated channel subfamily E member 4. (170 aa)
	KCNE1L	Potassium voltage-gated channel subfamily E member 1-like protein. (145 aa)
	CAV3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (151 aa)
	KCNQ1	Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family. (580 aa)
	SCN5A	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (2020 aa)
	CACNA2D1	Voltage-dependent calcium channel subunit alpha-2/delta-1. (959 aa)
	SNTA1	Alpha-1-syntrophin isoform X1. (505 aa)
	KCNE2	Potassium voltage-gated channel subfamily E member 2. (123 aa)
	KCNE1	Potassium voltage-gated channel subfamily E member 1. (129 aa)
	KCNE3	Potassium voltage-gated channel subfamily E member 3. (99 aa)
	KCNH2	Potassium voltage-gated channel subfamily H member 2. (1198 aa)
	SCN1B	Sodium channel subunit beta-1. (218 aa)
	WDR1	WD repeat-containing protein 1 isoform X1. (606 aa)
	RNF207	RING finger protein 207. (591 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP9	KCNE1	A0A340XRH9	A0A340WG61	A-kinase anchor protein 9.	Potassium voltage-gated channel subfamily E member 1.	0.645
AKAP9	KCNE1L	A0A340XRH9	A0A340XWP0	A-kinase anchor protein 9.	Potassium voltage-gated channel subfamily E member 1-like protein.	0.415
AKAP9	KCNE2	A0A340XRH9	A0A340WHP2	A-kinase anchor protein 9.	Potassium voltage-gated channel subfamily E member 2.	0.712
AKAP9	KCNE3	A0A340XRH9	A0A340WEZ0	A-kinase anchor protein 9.	Potassium voltage-gated channel subfamily E member 3.	0.554
AKAP9	KCNQ1	A0A340XRH9	A0A340Y2Y0	A-kinase anchor protein 9.	Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family.	0.833
AKAP9	NOS1AP	A0A340XRH9	A0A340XAM7	A-kinase anchor protein 9.	Uncharacterized protein C1orf226 homolog isoform X1.	0.404
AKAP9	SCN4B	A0A340XRH9	A0A340XBJ5	A-kinase anchor protein 9.	Sodium channel subunit beta-4.	0.582
AKAP9	SCN5A	A0A340XRH9	A0A340Y3C8	A-kinase anchor protein 9.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.477
AKAP9	SNTA1	A0A340XRH9	A0A340WIP7	A-kinase anchor protein 9.	Alpha-1-syntrophin isoform X1.	0.623
CACNA2D1	KCNH2	A0A340Y6I4	A0A340YA31	Voltage-dependent calcium channel subunit alpha-2/delta-1.	Potassium voltage-gated channel subfamily H member 2.	0.451
CACNA2D1	KCNQ1	A0A340Y6I4	A0A340Y2Y0	Voltage-dependent calcium channel subunit alpha-2/delta-1.	Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family.	0.495
CACNA2D1	SCN1B	A0A340Y6I4	A0A340YF00	Voltage-dependent calcium channel subunit alpha-2/delta-1.	Sodium channel subunit beta-1.	0.458
CACNA2D1	SCN5A	A0A340Y6I4	A0A340Y3C8	Voltage-dependent calcium channel subunit alpha-2/delta-1.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.643
CAV3	KCNE1	A0A340XWT1	A0A340WG61	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Potassium voltage-gated channel subfamily E member 1.	0.439
CAV3	KCNE2	A0A340XWT1	A0A340WHP2	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Potassium voltage-gated channel subfamily E member 2.	0.470
CAV3	KCNH2	A0A340XWT1	A0A340YA31	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Potassium voltage-gated channel subfamily H member 2.	0.474
CAV3	KCNQ1	A0A340XWT1	A0A340Y2Y0	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Potassium voltage-gated channel subfamily KQT member 1; Belongs to the potassium channel family.	0.402
CAV3	SCN4B	A0A340XWT1	A0A340XBJ5	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Sodium channel subunit beta-4.	0.439
CAV3	SCN5A	A0A340XWT1	A0A340Y3C8	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.414
CAV3	SNTA1	A0A340XWT1	A0A340WIP7	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Alpha-1-syntrophin isoform X1.	0.506