(26 nodes) Endoplasmic reticulum exit site network (Lipotes vexillifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YIPF5	Protein YIPF. (257 aa)
	SEC31A	Protein transport protein Sec31A isoform X1. (1231 aa)
	SEC16B	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (1048 aa)
	SEC24B	Protein transport protein Sec24B-like. (919 aa)
	SAR1A	GTP-binding protein SAR1a; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
	MIA3	Melanoma inhibitory activity protein 3. (1865 aa)
	LOC103070824	Leucine-rich repeat serine/threonine-protein kinase 2-like. (1609 aa)
	SEC16A	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (1715 aa)
	SEC24A	LOW QUALITY PROTEIN: protein transport protein Sec24A. (1103 aa)
	SAR1B	GTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
	SEC23B	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (767 aa)
	PPAP2B	Lipid phosphate phosphohydrolase 3. (312 aa)
	SEC24D	LOW QUALITY PROTEIN: protein transport protein Sec24D. (1035 aa)
	APOB	LOW QUALITY PROTEIN: apolipoprotein B-100. (4572 aa)
	LOC103076742	Protein transport protein Sec24B-like. (242 aa)
	SEC23A	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (770 aa)
	MIA2	LOW QUALITY PROTEIN: melanoma inhibitory activity protein 2. (655 aa)
	LRRK2	Leucine-rich repeat serine/threonine-protein kinase 2-like. (920 aa)
	SEC24C	LOW QUALITY PROTEIN: protein transport protein Sec24C. (1097 aa)
	LOC103086775	Transmembrane emp24 domain-containing protein 5 isoform X1. (225 aa)
	CTAGE5	cTAGE family member 5 isoform X1. (811 aa)
	TMED5	Transmembrane emp24 domain-containing protein 5 isoform X2. (191 aa)
	SEC31B	LOW QUALITY PROTEIN: protein transport protein Sec31B. (1062 aa)
	PREB	Prolactin regulatory element-binding protein isoform X1. (417 aa)
	PDCD6	Programmed cell death protein 6 isoform X1. (189 aa)
	TFG	Protein TFG-like isoform X1. (405 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	SAR1A	A0A340XUI9	A0A340X3U6	LOW QUALITY PROTEIN: apolipoprotein B-100.	GTP-binding protein SAR1a; Belongs to the small GTPase superfamily. SAR1 family.	0.428
APOB	SAR1B	A0A340XUI9	A0A340XMQ3	LOW QUALITY PROTEIN: apolipoprotein B-100.	GTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family.	0.618
CTAGE5	MIA2	A0A340Y327	A0A340XXL5	cTAGE family member 5 isoform X1.	LOW QUALITY PROTEIN: melanoma inhibitory activity protein 2.	0.893
CTAGE5	MIA3	A0A340Y327	A0A340X6W9	cTAGE family member 5 isoform X1.	Melanoma inhibitory activity protein 3.	0.927
CTAGE5	PREB	A0A340Y327	A0A340YD01	cTAGE family member 5 isoform X1.	Prolactin regulatory element-binding protein isoform X1.	0.938
CTAGE5	SEC23A	A0A340Y327	A0A340XXH1	cTAGE family member 5 isoform X1.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.531
CTAGE5	SEC23B	A0A340Y327	A0A340XR60	cTAGE family member 5 isoform X1.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.431
CTAGE5	SEC24C	A0A340Y327	A0A340Y1Q1	cTAGE family member 5 isoform X1.	LOW QUALITY PROTEIN: protein transport protein Sec24C.	0.667
CTAGE5	SEC24D	A0A340Y327	A0A340XU62	cTAGE family member 5 isoform X1.	LOW QUALITY PROTEIN: protein transport protein Sec24D.	0.756
CTAGE5	SEC31A	A0A340Y327	A0A340WDF2	cTAGE family member 5 isoform X1.	Protein transport protein Sec31A isoform X1.	0.769
LOC103070824	LRRK2	A0A340YJB6	A0A340WC47	Leucine-rich repeat serine/threonine-protein kinase 2-like.	Leucine-rich repeat serine/threonine-protein kinase 2-like.	0.947
LOC103076742	PREB	A0A340XVC6	A0A340YD01	Protein transport protein Sec24B-like.	Prolactin regulatory element-binding protein isoform X1.	0.670
LOC103076742	SAR1A	A0A340XVC6	A0A340X3U6	Protein transport protein Sec24B-like.	GTP-binding protein SAR1a; Belongs to the small GTPase superfamily. SAR1 family.	0.759
LOC103076742	SAR1B	A0A340XVC6	A0A340XMQ3	Protein transport protein Sec24B-like.	GTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family.	0.759
LOC103076742	SEC16A	A0A340XVC6	A0A340XIG6	Protein transport protein Sec24B-like.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.778
LOC103076742	SEC16B	A0A340XVC6	A0A340WNE0	Protein transport protein Sec24B-like.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.778
LOC103076742	SEC23A	A0A340XVC6	A0A340XXH1	Protein transport protein Sec24B-like.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.871
LOC103076742	SEC23B	A0A340XVC6	A0A340XR60	Protein transport protein Sec24B-like.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.871
LOC103076742	SEC24A	A0A340XVC6	A0A340XJ16	Protein transport protein Sec24B-like.	LOW QUALITY PROTEIN: protein transport protein Sec24A.	0.805
LOC103076742	SEC24B	A0A340XVC6	A0A340WRV1	Protein transport protein Sec24B-like.	Protein transport protein Sec24B-like.	0.933