51 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103076894	Histone H2B; Belongs to the histone H2B family. (126 aa)
	ATM	Serine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3058 aa)
	LOC103071163	Histone H2B; Belongs to the histone H2B family. (126 aa)
	RD3	Protein RD3. (195 aa)
	LOC103070340	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103071989	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103073911	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103084093	Probable RuBisCO transcriptional regulator-like. (313 aa)
	LOC103072822	Peptidylprolyl isomerase. (423 aa)
	LOC103080469	Probable RuBisCO transcriptional regulator-like. (308 aa)
	RBX1	E3 ubiquitin-protein ligase RBX1. (105 aa)
	LOC103069168	Uncharacterized protein LOC103069168. (404 aa)
	LOC103082119	Arsenical-resistance protein 3-like. (326 aa)
	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial. (492 aa)
	MRS2	Magnesium transporter. (443 aa)
	LOC103080769	Probable RuBisCO transcriptional regulator-like. (296 aa)
	LOC103078556	Arsenical-resistance protein 3-like. (346 aa)
	LOC103088015	Phosphomethylpyrimidine synthase, chloroplastic-like. (591 aa)
	LOC103090400	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103075360	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like. (689 aa)
	LOC103079408	Putative diaminopimelate epimerase, chloroplastic-like. (269 aa)
	LOC103075644	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like. (329 aa)
	LOC103074995	Ferulic acid decarboxylase 1-like. (488 aa)
	ACAP1	arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1. (741 aa)
	LOC103087021	Probable RuBisCO transcriptional regulator-like. (308 aa)
	PCSK4	Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family. (843 aa)
	LRRD1	LOW QUALITY PROTEIN: leucine-rich repeat and death domain-containing protein 1. (826 aa)
	LOC103071591	Uncharacterized protein LOC103071591. (405 aa)
	LOC103072420	Peptidylprolyl isomerase. (439 aa)
	LOC103081255	Histone H2B; Belongs to the histone H2B family. (142 aa)
	LOC103080427	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103081704	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103071507	Probable RuBisCO transcriptional regulator-like. (290 aa)
	LOC103083635	Probable RuBisCO transcriptional regulator-like. (301 aa)
	LOC103085468	Probable RuBisCO transcriptional regulator-like. (307 aa)
	LOC103079442	Probable RuBisCO transcriptional regulator-like. (297 aa)
	CLPS	Colipase isoform X1. (112 aa)
	LOC103085376	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like. (324 aa)
	LOC103072165	Probable RuBisCO transcriptional regulator-like. (299 aa)
	PPOX	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (477 aa)
	LOC103071438	Phosphomethylpyrimidine synthase, chloroplastic-like. (341 aa)
	LOC103088602	Probable RuBisCO transcriptional regulator-like. (233 aa)
	LOC103088516	50S ribosomal protein L10, chloroplastic-like. (195 aa)
	LOC103079101	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103080286	Probable fructokinase-1-like. (284 aa)
	FURIN	Furin isoform X1; Belongs to the peptidase S8 family. (792 aa)
	LOC103074300	Probable RuBisCO transcriptional regulator-like. (270 aa)
	LOC103086798	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103080666	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103086627	Probable RuBisCO transcriptional regulator-like. (293 aa)
	LOC103073765	Nitrogen regulatory protein P-II-like; Belongs to the P(II) protein family. (112 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATM	LOC103070340	A0A340WCK4	A0A340WQG4	Serine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...]	Histone H2B; Belongs to the histone H2B family.	0.410
ATM	LOC103076894	A0A340WCK4	A0A340YE94	Serine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...]	Histone H2B; Belongs to the histone H2B family.	0.410
ATM	LOC103090400	A0A340WCK4	A0A340X941	Serine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...]	Histone H2B; Belongs to the histone H2B family.	0.573
FDXR	LOC103073765	A0A340WZE4	A0A340YGG5	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Nitrogen regulatory protein P-II-like; Belongs to the P(II) protein family.	0.425
FDXR	LOC103079408	A0A340WZE4	A0A340XA48	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Putative diaminopimelate epimerase, chloroplastic-like.	0.837
LOC103070340	ATM	A0A340WQG4	A0A340WCK4	Histone H2B; Belongs to the histone H2B family.	Serine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...]	0.410
LOC103071507	LOC103074300	A0A340XWC8	A0A340YE09	Probable RuBisCO transcriptional regulator-like.	Probable RuBisCO transcriptional regulator-like.	0.417
LOC103071591	LOC103072822	A0A340XN49	A0A340WS79	Uncharacterized protein LOC103071591.	Peptidylprolyl isomerase.	0.447
LOC103072420	LOC103088516	A0A340XN97	A0A340Y8W9	Peptidylprolyl isomerase.	50S ribosomal protein L10, chloroplastic-like.	0.787
LOC103072822	LOC103071591	A0A340WS79	A0A340XN49	Peptidylprolyl isomerase.	Uncharacterized protein LOC103071591.	0.447
LOC103072822	LOC103088516	A0A340WS79	A0A340Y8W9	Peptidylprolyl isomerase.	50S ribosomal protein L10, chloroplastic-like.	0.829
LOC103073765	FDXR	A0A340YGG5	A0A340WZE4	Nitrogen regulatory protein P-II-like; Belongs to the P(II) protein family.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.425
LOC103074300	LOC103071507	A0A340YE09	A0A340XWC8	Probable RuBisCO transcriptional regulator-like.	Probable RuBisCO transcriptional regulator-like.	0.417
LOC103075360	LOC103075644	A0A340X9X8	A0A340XAF1	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	0.995
LOC103075360	LOC103085376	A0A340X9X8	A0A340Y191	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	0.995
LOC103075644	LOC103075360	A0A340XAF1	A0A340X9X8	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	0.995
LOC103075644	LOC103085376	A0A340XAF1	A0A340Y191	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	0.901
LOC103076894	ATM	A0A340YE94	A0A340WCK4	Histone H2B; Belongs to the histone H2B family.	Serine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...]	0.410
LOC103079408	FDXR	A0A340XA48	A0A340WZE4	Putative diaminopimelate epimerase, chloroplastic-like.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.837
LOC103085376	LOC103075360	A0A340Y191	A0A340X9X8	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	glycine--tRNA ligase 2, chloroplastic/mitochondrial-like.	0.995