6 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCLRE1C	Protein artemis. (710 aa)
	LENG9	Leukocyte receptor cluster member 9. (618 aa)
	LIG4	DNA ligase. (911 aa)
	NHEJ1	Non-homologous end-joining factor 1. (299 aa)
	LOC103087926	Uncharacterized protein C9orf142 homolog. (177 aa)
	PRKDC	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family. (4131 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCLRE1C	LIG4	A0A340XLE0	A0A340XTX4	Protein artemis.	DNA ligase.	0.916
DCLRE1C	NHEJ1	A0A340XLE0	A0A340WBK7	Protein artemis.	Non-homologous end-joining factor 1.	0.403
DCLRE1C	PRKDC	A0A340XLE0	A0A340XRV8	Protein artemis.	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	0.964
LIG4	DCLRE1C	A0A340XTX4	A0A340XLE0	DNA ligase.	Protein artemis.	0.916
LIG4	LOC103087926	A0A340XTX4	A0A340XC61	DNA ligase.	Uncharacterized protein C9orf142 homolog.	0.678
LIG4	NHEJ1	A0A340XTX4	A0A340WBK7	DNA ligase.	Non-homologous end-joining factor 1.	0.824
LIG4	PRKDC	A0A340XTX4	A0A340XRV8	DNA ligase.	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	0.947
LOC103087926	LIG4	A0A340XC61	A0A340XTX4	Uncharacterized protein C9orf142 homolog.	DNA ligase.	0.678
LOC103087926	NHEJ1	A0A340XC61	A0A340WBK7	Uncharacterized protein C9orf142 homolog.	Non-homologous end-joining factor 1.	0.618
LOC103087926	PRKDC	A0A340XC61	A0A340XRV8	Uncharacterized protein C9orf142 homolog.	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	0.533
NHEJ1	DCLRE1C	A0A340WBK7	A0A340XLE0	Non-homologous end-joining factor 1.	Protein artemis.	0.403
NHEJ1	LIG4	A0A340WBK7	A0A340XTX4	Non-homologous end-joining factor 1.	DNA ligase.	0.824
NHEJ1	LOC103087926	A0A340WBK7	A0A340XC61	Non-homologous end-joining factor 1.	Uncharacterized protein C9orf142 homolog.	0.618
NHEJ1	PRKDC	A0A340WBK7	A0A340XRV8	Non-homologous end-joining factor 1.	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	0.480
PRKDC	DCLRE1C	A0A340XRV8	A0A340XLE0	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	Protein artemis.	0.964
PRKDC	LIG4	A0A340XRV8	A0A340XTX4	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	DNA ligase.	0.947
PRKDC	LOC103087926	A0A340XRV8	A0A340XC61	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein C9orf142 homolog.	0.533
PRKDC	NHEJ1	A0A340XRV8	A0A340WBK7	DNA-dependent protein kinase catalytic subunit isoform X1; Belongs to the PI3/PI4-kinase family.	Non-homologous end-joining factor 1.	0.480