(6 nodes) Alveolar lamellar body network (Lipotes vexillifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LAMP3	Lysosome-associated membrane glycoprotein 3. (423 aa)
	SFTPB	Pulmonary surfactant-associated protein B. (376 aa)
	CTSH	Pro-cathepsin H isoform X1; Belongs to the peptidase C1 family. (335 aa)
	ABCA3	ATP-binding cassette sub-family A member 3. (1703 aa)
	LOC103080200	Probable sulfate/thiosulfate import ATP-binding protein CysA-like. (385 aa)
	SFTPC	Pulmonary surfactant-associated protein C isoform X1. (205 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA3	SFTPB	A0A340X2T3	A0A340Y547	ATP-binding cassette sub-family A member 3.	Pulmonary surfactant-associated protein B.	0.687
ABCA3	SFTPC	A0A340X2T3	A0A340WPC5	ATP-binding cassette sub-family A member 3.	Pulmonary surfactant-associated protein C isoform X1.	0.681
CTSH	SFTPB	A0A340XE54	A0A340Y547	Pro-cathepsin H isoform X1; Belongs to the peptidase C1 family.	Pulmonary surfactant-associated protein B.	0.810
CTSH	SFTPC	A0A340XE54	A0A340WPC5	Pro-cathepsin H isoform X1; Belongs to the peptidase C1 family.	Pulmonary surfactant-associated protein C isoform X1.	0.823
LOC103080200	SFTPB	A0A340WRG1	A0A340Y547	Probable sulfate/thiosulfate import ATP-binding protein CysA-like.	Pulmonary surfactant-associated protein B.	0.687
LOC103080200	SFTPC	A0A340WRG1	A0A340WPC5	Probable sulfate/thiosulfate import ATP-binding protein CysA-like.	Pulmonary surfactant-associated protein C isoform X1.	0.681
SFTPB	ABCA3	A0A340Y547	A0A340X2T3	Pulmonary surfactant-associated protein B.	ATP-binding cassette sub-family A member 3.	0.687
SFTPB	CTSH	A0A340Y547	A0A340XE54	Pulmonary surfactant-associated protein B.	Pro-cathepsin H isoform X1; Belongs to the peptidase C1 family.	0.810
SFTPB	LOC103080200	A0A340Y547	A0A340WRG1	Pulmonary surfactant-associated protein B.	Probable sulfate/thiosulfate import ATP-binding protein CysA-like.	0.687
SFTPB	SFTPC	A0A340Y547	A0A340WPC5	Pulmonary surfactant-associated protein B.	Pulmonary surfactant-associated protein C isoform X1.	0.981
SFTPC	ABCA3	A0A340WPC5	A0A340X2T3	Pulmonary surfactant-associated protein C isoform X1.	ATP-binding cassette sub-family A member 3.	0.681
SFTPC	CTSH	A0A340WPC5	A0A340XE54	Pulmonary surfactant-associated protein C isoform X1.	Pro-cathepsin H isoform X1; Belongs to the peptidase C1 family.	0.823
SFTPC	LOC103080200	A0A340WPC5	A0A340WRG1	Pulmonary surfactant-associated protein C isoform X1.	Probable sulfate/thiosulfate import ATP-binding protein CysA-like.	0.681
SFTPC	SFTPB	A0A340WPC5	A0A340Y547	Pulmonary surfactant-associated protein C isoform X1.	Pulmonary surfactant-associated protein B.	0.981