(12 nodes) Zinc finger, CXXC-type network (Lipotes vexillifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KMT2B	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (2719 aa)
	CXXC5	CXXC-type zinc finger protein 5 isoform X1. (320 aa)
	DNMT1	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1615 aa)
	TET3	Methylcytosine dioxygenase TET3-like. (1799 aa)
	LOC103076185	Methylcytosine dioxygenase TET1-like. (1542 aa)
	KMT2A	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (3974 aa)
	FBXL19	F-box/LRR-repeat protein 19 isoform X1. (694 aa)
	KDM2A	Lysine-specific demethylase 2A isoform X1. (1162 aa)
	KDM2B	Lysine-specific demethylase 2B isoform X1. (1270 aa)
	LOC103086719	CXXC-type zinc finger protein 4-like. (185 aa)
	MBD1	methyl-CpG-binding domain protein 1 isoform X1. (714 aa)
	CXXC1	CXXC-type zinc finger protein 1. (655 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNMT1	LOC103076185	A0A340XN55	A0A340X8Z9	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Methylcytosine dioxygenase TET1-like.	0.517
DNMT1	MBD1	A0A340XN55	A0A340XWD1	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	methyl-CpG-binding domain protein 1 isoform X1.	0.401
DNMT1	TET3	A0A340XN55	A0A340XJJ0	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Methylcytosine dioxygenase TET3-like.	0.531
KDM2A	KMT2A	A0A340WUE2	A0A340X4X6	Lysine-specific demethylase 2A isoform X1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.496
KMT2A	KDM2A	A0A340X4X6	A0A340WUE2	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Lysine-specific demethylase 2A isoform X1.	0.496
LOC103076185	DNMT1	A0A340X8Z9	A0A340XN55	Methylcytosine dioxygenase TET1-like.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.517
MBD1	DNMT1	A0A340XWD1	A0A340XN55	methyl-CpG-binding domain protein 1 isoform X1.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.401
MBD1	TET3	A0A340XWD1	A0A340XJJ0	methyl-CpG-binding domain protein 1 isoform X1.	Methylcytosine dioxygenase TET3-like.	0.456
TET3	DNMT1	A0A340XJJ0	A0A340XN55	Methylcytosine dioxygenase TET3-like.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.531
TET3	MBD1	A0A340XJJ0	A0A340XWD1	Methylcytosine dioxygenase TET3-like.	methyl-CpG-binding domain protein 1 isoform X1.	0.456