13 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTSB	Cathepsin B; Belongs to the peptidase C1 family. (335 aa)
	TLR3	LOW QUALITY PROTEIN: toll-like receptor 3; Belongs to the Toll-like receptor family. (956 aa)
	CTSK	Cathepsin K; Belongs to the peptidase C1 family. (329 aa)
	CTSS	Cathepsin S isoform X1; Belongs to the peptidase C1 family. (340 aa)
	CNPY3	Protein canopy homolog 3. (285 aa)
	TLR8	Toll-like receptor 8; Belongs to the Toll-like receptor family. (1035 aa)
	LGMN	Legumain. (434 aa)
	TLR7	Toll-like receptor 7 isoform X1. (1067 aa)
	HSP90B1	Endoplasmin. (803 aa)
	TWF2	Toll-like receptor 9-like isoform X2. (1065 aa)
	UNC93B1	Protein unc-93 homolog B1. (600 aa)
	CTSL	Cathepsin L1; Belongs to the peptidase C1 family. (332 aa)
	LOC103089492	Cathepsin L1-like; Belongs to the peptidase C1 family. (333 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNPY3	HSP90B1	A0A340XDV9	A0A340WZ51	Protein canopy homolog 3.	Endoplasmin.	0.924
CNPY3	TLR3	A0A340XDV9	A0A340XZ05	Protein canopy homolog 3.	LOW QUALITY PROTEIN: toll-like receptor 3; Belongs to the Toll-like receptor family.	0.452
CNPY3	TLR7	A0A340XDV9	A0A340X1C9	Protein canopy homolog 3.	Toll-like receptor 7 isoform X1.	0.550
CNPY3	TLR8	A0A340XDV9	A0A340X7U3	Protein canopy homolog 3.	Toll-like receptor 8; Belongs to the Toll-like receptor family.	0.550
CNPY3	TWF2	A0A340XDV9	A0A340WSQ5	Protein canopy homolog 3.	Toll-like receptor 9-like isoform X2.	0.578
CNPY3	UNC93B1	A0A340XDV9	A0A340WNY8	Protein canopy homolog 3.	Protein unc-93 homolog B1.	0.636
CTSB	CTSK	A0A340YGJ0	A0A340XLZ5	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin K; Belongs to the peptidase C1 family.	0.472
CTSB	CTSL	A0A340YGJ0	A0A340WMM9	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin L1; Belongs to the peptidase C1 family.	0.546
CTSB	CTSS	A0A340YGJ0	A0A340XJK2	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin S isoform X1; Belongs to the peptidase C1 family.	0.572
CTSB	LGMN	A0A340YGJ0	A0A340X6T4	Cathepsin B; Belongs to the peptidase C1 family.	Legumain.	0.785
CTSB	LOC103089492	A0A340YGJ0	A0A340WI14	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin L1-like; Belongs to the peptidase C1 family.	0.548
CTSK	CTSB	A0A340XLZ5	A0A340YGJ0	Cathepsin K; Belongs to the peptidase C1 family.	Cathepsin B; Belongs to the peptidase C1 family.	0.472
CTSK	CTSL	A0A340XLZ5	A0A340WMM9	Cathepsin K; Belongs to the peptidase C1 family.	Cathepsin L1; Belongs to the peptidase C1 family.	0.424
CTSK	LGMN	A0A340XLZ5	A0A340X6T4	Cathepsin K; Belongs to the peptidase C1 family.	Legumain.	0.607
CTSK	LOC103089492	A0A340XLZ5	A0A340WI14	Cathepsin K; Belongs to the peptidase C1 family.	Cathepsin L1-like; Belongs to the peptidase C1 family.	0.426
CTSK	TWF2	A0A340XLZ5	A0A340WSQ5	Cathepsin K; Belongs to the peptidase C1 family.	Toll-like receptor 9-like isoform X2.	0.737
CTSL	CTSB	A0A340WMM9	A0A340YGJ0	Cathepsin L1; Belongs to the peptidase C1 family.	Cathepsin B; Belongs to the peptidase C1 family.	0.546
CTSL	CTSK	A0A340WMM9	A0A340XLZ5	Cathepsin L1; Belongs to the peptidase C1 family.	Cathepsin K; Belongs to the peptidase C1 family.	0.424
CTSL	CTSS	A0A340WMM9	A0A340XJK2	Cathepsin L1; Belongs to the peptidase C1 family.	Cathepsin S isoform X1; Belongs to the peptidase C1 family.	0.933
CTSL	LGMN	A0A340WMM9	A0A340X6T4	Cathepsin L1; Belongs to the peptidase C1 family.	Legumain.	0.625