22 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THAP1	THAP domain-containing protein 1. (213 aa)
	PRKAR2B	cAMP-dependent protein kinase type II-beta regulatory subunit. (415 aa)
	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit. (380 aa)
	LOC103082213	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1. (589 aa)
	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (602 aa)
	PDE4D	Phosphodiesterase. (747 aa)
	THAP7	THAP domain-containing protein 7. (313 aa)
	PPP1CA	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
	LOC103070240	Cyclic nucleotide-binding domain-containing protein 2-like. (583 aa)
	PPP2CB	Serine/threonine-protein phosphatase. (309 aa)
	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit isoform X1. (401 aa)
	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily. (351 aa)
	PRKACB	cAMP-dependent protein kinase catalytic subunit beta. (274 aa)
	PDE4A	Phosphodiesterase. (868 aa)
	PDE4C	Phosphodiesterase. (695 aa)
	PDE4B	Phosphodiesterase. (739 aa)
	PPP2CA	Serine/threonine-protein phosphatase. (309 aa)
	THAP6	THAP domain-containing protein 6. (222 aa)
	PPP1R1B	Protein phosphatase 1 regulatory subunit 1B. (202 aa)
	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1. (644 aa)
	PRKAR1B	cAMP-dependent protein kinase type I-beta regulatory subunit isoform X1. (381 aa)
	CDK5	Cyclin-dependent kinase 5 isoform X1; Belongs to the protein kinase superfamily. (292 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK5	PPP1R1B	A0A340Y9Y7	A0A340XYA8	Cyclin-dependent kinase 5 isoform X1; Belongs to the protein kinase superfamily.	Protein phosphatase 1 regulatory subunit 1B.	0.986
LOC103070240	PRKACA	A0A340WLG3	A0A340Y602	Cyclic nucleotide-binding domain-containing protein 2-like.	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.613
LOC103070240	PRKACB	A0A340WLG3	A0A340XE43	Cyclic nucleotide-binding domain-containing protein 2-like.	cAMP-dependent protein kinase catalytic subunit beta.	0.613
LOC103070240	THAP1	A0A340WLG3	A0A340X2H6	Cyclic nucleotide-binding domain-containing protein 2-like.	THAP domain-containing protein 1.	0.613
LOC103070240	THAP6	A0A340WLG3	A0A340XVV1	Cyclic nucleotide-binding domain-containing protein 2-like.	THAP domain-containing protein 6.	0.613
LOC103070240	THAP7	A0A340WLG3	A0A340WW33	Cyclic nucleotide-binding domain-containing protein 2-like.	THAP domain-containing protein 7.	0.613
LOC103082213	PPP1CA	A0A340X9T8	A0A340WSB4	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.532
LOC103082213	PPP2CA	A0A340X9T8	A0A340XQW3	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1.	Serine/threonine-protein phosphatase.	0.999
LOC103082213	PPP2CB	A0A340X9T8	A0A340WJD4	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1.	Serine/threonine-protein phosphatase.	0.998
LOC103082213	PPP2R1B	A0A340X9T8	A0A340XZK1	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1.	0.940
LOC103082213	PPP2R5D	A0A340X9T8	A0A340XA55	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1.	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.	0.967
PDE4A	PPP1R1B	A0A340XGW3	A0A340XYA8	Phosphodiesterase.	Protein phosphatase 1 regulatory subunit 1B.	0.429
PDE4A	PRKACA	A0A340XGW3	A0A340Y602	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.964
PDE4A	PRKACB	A0A340XGW3	A0A340XE43	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit beta.	0.964
PDE4B	PPP1R1B	A0A340XLI4	A0A340XYA8	Phosphodiesterase.	Protein phosphatase 1 regulatory subunit 1B.	0.784
PDE4B	PRKACA	A0A340XLI4	A0A340Y602	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.980
PDE4B	PRKACB	A0A340XLI4	A0A340XE43	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit beta.	0.966
PDE4C	PRKACA	A0A340XI69	A0A340Y602	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.948
PDE4C	PRKACB	A0A340XI69	A0A340XE43	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit beta.	0.948
PDE4D	PRKACA	A0A340X1V4	A0A340Y602	Phosphodiesterase.	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.968