33 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PNMA1	Paraneoplastic antigen Ma1. (353 aa)
	CHST2	Sulfotransferase; Belongs to the sulfotransferase 1 family. (530 aa)
	ST3GAL1	CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1; Belongs to the glycosyltransferase 29 family. (342 aa)
	PRELP	Prolargin. (379 aa)
	B3GNT4	Hexosyltransferase. (357 aa)
	KERA	Keratocan. (353 aa)
	B4GALT4	Beta-1,4-galactosyltransferase 4. (344 aa)
	SLC35D2	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter. (336 aa)
	FMOD	Fibromodulin. (376 aa)
	LUM	Lumican. (340 aa)
	XPO6	Exportin-6. (1111 aa)
	CHST1	Sulfotransferase; Belongs to the sulfotransferase 1 family. (411 aa)
	B4GALT6	Beta-1,4-galactosyltransferase 6 isoform X1. (382 aa)
	LOC103087286	Paraneoplastic antigen-like protein 5-like. (444 aa)
	B4GALT5	Beta-1,4-galactosyltransferase 5. (388 aa)
	B3GNT7	Hexosyltransferase. (401 aa)
	CHST6	Sulfotransferase; Belongs to the sulfotransferase 1 family. (395 aa)
	ST3GAL4	CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 4 isoform X1; Belongs to the glycosyltransferase 29 family. (333 aa)
	B3GNT2	Hexosyltransferase. (397 aa)
	B3GNT1	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase. (415 aa)
	ST3GAL2	CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 2; Belongs to the glycosyltransferase 29 family. (350 aa)
	B4GALT1	Beta-1,4-galactosyltransferase 1 isoform X1. (404 aa)
	B4GALT3	Beta-1,4-galactosyltransferase 3 isoform X1. (396 aa)
	OGN	Mimecan isoform X1. (299 aa)
	OMD	Osteomodulin isoform X1. (421 aa)
	LOC103089741	Aggrecan core protein-like. (251 aa)
	ST3GAL3	CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1; Belongs to the glycosyltransferase 29 family. (389 aa)
	B4GALT2	Beta-1,4-galactosyltransferase 2. (369 aa)
	ST3GAL6	Type 2 lactosamine alpha-2,3-sialyltransferase isoform X1; Belongs to the glycosyltransferase 29 family. (332 aa)
	ACAN	Aggrecan core protein. (2042 aa)
	PNMAL1	LOW QUALITY PROTEIN: paraneoplastic Ma antigen family-like 1. (499 aa)
	PNMA2	LOW QUALITY PROTEIN: paraneoplastic Ma antigen 2. (364 aa)
	MOAP1	LOW QUALITY PROTEIN: modulator of apoptosis 1. (352 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACAN	FMOD	A0A340YBY9	A0A340WPQ5	Aggrecan core protein.	Fibromodulin.	0.747
ACAN	KERA	A0A340YBY9	A0A340WKD6	Aggrecan core protein.	Keratocan.	0.614
ACAN	LUM	A0A340YBY9	A0A340WQB7	Aggrecan core protein.	Lumican.	0.672
ACAN	OGN	A0A340YBY9	A0A340Y3H1	Aggrecan core protein.	Mimecan isoform X1.	0.536
ACAN	OMD	A0A340YBY9	A0A340Y4R6	Aggrecan core protein.	Osteomodulin isoform X1.	0.462
ACAN	PRELP	A0A340YBY9	A0A340WHF0	Aggrecan core protein.	Prolargin.	0.566
B3GNT2	B3GNT4	A0A340XS84	A0A340WJ64	Hexosyltransferase.	Hexosyltransferase.	0.900
B3GNT2	B4GALT1	A0A340XS84	A0A340Y0J0	Hexosyltransferase.	Beta-1,4-galactosyltransferase 1 isoform X1.	0.950
B3GNT2	B4GALT2	A0A340XS84	A0A340YA52	Hexosyltransferase.	Beta-1,4-galactosyltransferase 2.	0.915
B3GNT2	B4GALT3	A0A340XS84	A0A340Y0M4	Hexosyltransferase.	Beta-1,4-galactosyltransferase 3 isoform X1.	0.960
B3GNT2	B4GALT4	A0A340XS84	A0A340WKF6	Hexosyltransferase.	Beta-1,4-galactosyltransferase 4.	0.937
B3GNT2	B4GALT5	A0A340XS84	A0A340WAE4	Hexosyltransferase.	Beta-1,4-galactosyltransferase 5.	0.624
B3GNT2	CHST1	A0A340XS84	A0A340X3F2	Hexosyltransferase.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.448
B3GNT2	KERA	A0A340XS84	A0A340WKD6	Hexosyltransferase.	Keratocan.	0.436
B3GNT2	ST3GAL1	A0A340XS84	A0A340WEQ5	Hexosyltransferase.	CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.549
B3GNT2	ST3GAL3	A0A340XS84	A0A340Y925	Hexosyltransferase.	CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1; Belongs to the glycosyltransferase 29 family.	0.439
B3GNT2	ST3GAL6	A0A340XS84	A0A340YAM7	Hexosyltransferase.	Type 2 lactosamine alpha-2,3-sialyltransferase isoform X1; Belongs to the glycosyltransferase 29 family.	0.947
B3GNT4	B3GNT2	A0A340WJ64	A0A340XS84	Hexosyltransferase.	Hexosyltransferase.	0.900
B3GNT4	B4GALT1	A0A340WJ64	A0A340Y0J0	Hexosyltransferase.	Beta-1,4-galactosyltransferase 1 isoform X1.	0.942
B3GNT4	B4GALT2	A0A340WJ64	A0A340YA52	Hexosyltransferase.	Beta-1,4-galactosyltransferase 2.	0.949