51 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ERAS	GTPase ERas. (233 aa)
	FOSL2	Fos-related antigen 2 isoform X1. (327 aa)
	LOC103086614	LOW QUALITY PROTEIN: death domain-containing membrane protein NRADD-like. (232 aa)
	FCER1G	High affinity immunoglobulin epsilon receptor subunit gamma. (87 aa)
	HRAS	GTPase HRas isoform X1. (189 aa)
	PAK2	Non-specific serine/threonine protein kinase. (523 aa)
	MAPK10	Mitogen-activated protein kinase. (464 aa)
	MAPK9	Mitogen-activated protein kinase. (424 aa)
	LYN	Tyrosine-protein kinase. (516 aa)
	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1291 aa)
	NRAS	GTPase NRas. (189 aa)
	MS4A2	High affinity immunoglobulin epsilon receptor subunit beta. (243 aa)
	ANKHD1	Ankyrin repeat and KH domain-containing protein 1 isoform X1. (2539 aa)
	PAK1	Non-specific serine/threonine protein kinase. (563 aa)
	VAV1	Proto-oncogene vav isoform X1. (844 aa)
	JUN	Transcription factor AP-1; Belongs to the bZIP family. (337 aa)
	FCER1A	High affinity immunoglobulin epsilon receptor subunit alpha. (262 aa)
	CSDE1	Cold shock domain-containing protein E1 isoform X1. (843 aa)
	MS4A1	B-lymphocyte antigen CD20. (295 aa)
	FOS	Proto-oncogene c-Fos isoform X1. (380 aa)
	MAP2K7	Dual specificity mitogen-activated protein kinase kinase 7 isoform X1. (435 aa)
	FCRL5	Fc receptor-like protein 5. (972 aa)
	FCRL3	Fc receptor-like protein 3. (715 aa)
	FCRL1	LOW QUALITY PROTEIN: Fc receptor-like protein 1. (429 aa)
	SHC1	SHC-transforming protein 1 isoform X1. (584 aa)
	FCRL4	LOW QUALITY PROTEIN: Fc receptor-like protein 4. (527 aa)
	LOC103075075	Putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like. (149 aa)
	LOC103072956	Uncharacterized protein LOC103072956. (225 aa)
	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4 isoform X1; Belongs to the protein kinase superfamily. (410 aa)
	HARBI1	Putative nuclease HARBI1. (349 aa)
	GRB2	Growth factor receptor-bound protein 2 isoform X1. (217 aa)
	GRAP2	GRB2-related adapter protein 2. (317 aa)
	LOC103075361	Putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like. (149 aa)
	LOC103090744	Uncharacterized protein LOC103090744. (317 aa)
	LAT	Linker for activation of T-cells family member 1. (260 aa)
	MAPK3	Mitogen-activated protein kinase. (325 aa)
	PLCG2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1266 aa)
	SPNS3	Protein spinster homolog 3. (518 aa)
	SPNS1	Protein spinster homolog 1 isoform X1. (552 aa)
	MAP3K1	Mitogen-activated protein kinase kinase kinase 1. (1926 aa)
	VAV2	Guanine nucleotide exchange factor VAV2 isoform X1. (878 aa)
	IGLL5	Immunoglobulin lambda-like polypeptide 5. (234 aa)
	LOC103084661	Obscurin-like. (361 aa)
	MAPK1	Mitogen-activated protein kinase 1 isoform X1. (263 aa)
	RAC1	Ras-related C3 botulinum toxin substrate 1 isoform X1. (201 aa)
	VAV3	Guanine nucleotide exchange factor VAV3 isoform X1. (875 aa)
	SOS1	Son of sevenless homolog 1. (1333 aa)
	LCP2	Lymphocyte cytosolic protein 2. (532 aa)
	SYK	Tyrosine-protein kinase SYK isoform X1. (636 aa)
	KRAS	GTPase KRas. (188 aa)
	MAPK8	Mitogen-activated protein kinase. (427 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	GRB2	A0A340XM96	A0A340X5P7	Cold shock domain-containing protein E1 isoform X1.	Growth factor receptor-bound protein 2 isoform X1.	0.562
CSDE1	LYN	A0A340XM96	A0A340XV93	Cold shock domain-containing protein E1 isoform X1.	Tyrosine-protein kinase.	0.416
CSDE1	SOS1	A0A340XM96	A0A340WF86	Cold shock domain-containing protein E1 isoform X1.	Son of sevenless homolog 1.	0.612
ERAS	GRB2	A0A340WN40	A0A340X5P7	GTPase ERas.	Growth factor receptor-bound protein 2 isoform X1.	0.562
ERAS	LYN	A0A340WN40	A0A340XV93	GTPase ERas.	Tyrosine-protein kinase.	0.416
ERAS	SOS1	A0A340WN40	A0A340WF86	GTPase ERas.	Son of sevenless homolog 1.	0.651
FCER1A	FCER1G	A0A340XMI6	A0A340Y6S0	High affinity immunoglobulin epsilon receptor subunit alpha.	High affinity immunoglobulin epsilon receptor subunit gamma.	0.970
FCER1A	LOC103075075	A0A340XMI6	A0A340X8S9	High affinity immunoglobulin epsilon receptor subunit alpha.	Putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like.	0.927
FCER1A	LOC103075361	A0A340XMI6	A0A340X4F8	High affinity immunoglobulin epsilon receptor subunit alpha.	Putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like.	0.927
FCER1A	LYN	A0A340XMI6	A0A340XV93	High affinity immunoglobulin epsilon receptor subunit alpha.	Tyrosine-protein kinase.	0.652
FCER1A	MS4A1	A0A340XMI6	A0A340XLF6	High affinity immunoglobulin epsilon receptor subunit alpha.	B-lymphocyte antigen CD20.	0.571
FCER1A	MS4A2	A0A340XMI6	A0A340XSE3	High affinity immunoglobulin epsilon receptor subunit alpha.	High affinity immunoglobulin epsilon receptor subunit beta.	0.996
FCER1A	SYK	A0A340XMI6	A0A340WDP8	High affinity immunoglobulin epsilon receptor subunit alpha.	Tyrosine-protein kinase SYK isoform X1.	0.923
FCER1G	FCER1A	A0A340Y6S0	A0A340XMI6	High affinity immunoglobulin epsilon receptor subunit gamma.	High affinity immunoglobulin epsilon receptor subunit alpha.	0.970
FCER1G	HARBI1	A0A340Y6S0	A0A340X749	High affinity immunoglobulin epsilon receptor subunit gamma.	Putative nuclease HARBI1.	0.410
FCER1G	LAT	A0A340Y6S0	A0A340X0N9	High affinity immunoglobulin epsilon receptor subunit gamma.	Linker for activation of T-cells family member 1.	0.519
FCER1G	LCP2	A0A340Y6S0	A0A340WE85	High affinity immunoglobulin epsilon receptor subunit gamma.	Lymphocyte cytosolic protein 2.	0.564
FCER1G	LOC103075075	A0A340Y6S0	A0A340X8S9	High affinity immunoglobulin epsilon receptor subunit gamma.	Putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like.	0.929
FCER1G	LOC103075361	A0A340Y6S0	A0A340X4F8	High affinity immunoglobulin epsilon receptor subunit gamma.	Putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8-like.	0.929
FCER1G	LOC103086614	A0A340Y6S0	A0A340Y9I4	High affinity immunoglobulin epsilon receptor subunit gamma.	LOW QUALITY PROTEIN: death domain-containing membrane protein NRADD-like.	0.410