60 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACAN	Aggrecan core protein. (2042 aa)
	HAPLN1	Hyaluronan and proteoglycan link protein 1. (354 aa)
	COL6A3	LOW QUALITY PROTEIN: collagen alpha-3(VI) chain. (2962 aa)
	DMP1	Dentin matrix acidic phosphoprotein 1 isoform X1. (517 aa)
	TNR	tenascin-R. (1358 aa)
	LAMA2	Laminin subunit alpha-2 isoform X1. (3125 aa)
	COL6A1	Collagen alpha-1(VI) chain. (1150 aa)
	ITGAX	Integrin alpha-X; Belongs to the integrin alpha chain family. (1160 aa)
	DSPP	Dentin sialophosphoprotein. (1110 aa)
	TNC	Tenascin isoform X1. (2200 aa)
	DCN	Decorin; May affect the rate of fibrils formation. (360 aa)
	LOC103069249	Collagen alpha-2(I) chain-like isoform X3. (1370 aa)
	TNN	tenascin-N. (1296 aa)
	MATN1	Cartilage matrix protein. (495 aa)
	LAMC1	LOW QUALITY PROTEIN: laminin subunit gamma-1. (1618 aa)
	MUSK	Muscle, skeletal receptor tyrosine-protein kinase isoform X1. (879 aa)
	SPARC	SPARC isoform X1. (303 aa)
	COL9A1	Collagen alpha-1(IX) chain isoform X1. (925 aa)
	ITGB5	Integrin beta; Belongs to the integrin beta chain family. (800 aa)
	AGRN	Agrin. (2143 aa)
	MCMDC2	MCM domain-containing protein 2. (681 aa)
	LAMB2	Laminin subunit beta-2. (1801 aa)
	LOC103071971	Collagen alpha-1(I) chain-like. (1463 aa)
	APP	Amyloid beta A4 protein isoform X1. (767 aa)
	MATN4	Matrilin-4. (587 aa)
	COL3A1	Collagen alpha-1(III) chain-like. (1462 aa)
	LOC103089741	Aggrecan core protein-like. (251 aa)
	ITGA7	Integrin alpha-7 isoform X1; Belongs to the integrin alpha chain family. (1141 aa)
	ASPN	Asporin isoform X1. (412 aa)
	SERPINE1	Plasminogen activator inhibitor 1; Belongs to the serpin family. (402 aa)
	LOC103088885	Collagen alpha-5(VI) chain-like. (2189 aa)
	ITGB1	Integrin beta; Belongs to the integrin beta chain family. (805 aa)
	ITGAV	Integrin alpha-V; Belongs to the integrin alpha chain family. (1311 aa)
	COL2A1	Collagen alpha-1(II) chain isoform X1. (1487 aa)
	MATN3	Matrilin-3. (482 aa)
	COL5A2	Collagen alpha-2(V) chain. (1499 aa)
	COL6A5	Collagen alpha-5(VI) chain. (440 aa)
	COMP	Cartilage oligomeric matrix protein isoform X1. (756 aa)
	ITGA8	Integrin alpha-8; Belongs to the integrin alpha chain family. (1060 aa)
	NCAN	Neurocan core protein. (1339 aa)
	ITGA9	Integrin alpha-9; Belongs to the integrin alpha chain family. (1035 aa)
	COL6A6	LOW QUALITY PROTEIN: collagen alpha-6(VI) chain. (2282 aa)
	COL9A3	Collagen alpha-3(IX) chain. (684 aa)
	COL5A3	Collagen alpha-3(V) chain isoform X1. (1744 aa)
	HSPG2	Basement membrane-specific heparan sulfate proteoglycan core protein. (4406 aa)
	TNXB	LOW QUALITY PROTEIN: tenascin-X. (3938 aa)
	BGN	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (369 aa)
	FN1	LOW QUALITY PROTEIN: fibronectin. (2483 aa)
	ITGB3	Integrin beta; Belongs to the integrin beta chain family. (784 aa)
	BCAN	Brevican core protein. (924 aa)
	LAMB1	Laminin subunit beta-1. (1786 aa)
	ITGA2	Integrin alpha-2; Belongs to the integrin alpha chain family. (1179 aa)
	COL9A2	Collagen alpha-2(IX) chain. (691 aa)
	LRP4	Low-density lipoprotein receptor-related protein 4. (1881 aa)
	COL5A1	Collagen alpha-1(V) chain isoform X1. (1841 aa)
	ITGA2B	Integrin alpha-IIb; Belongs to the integrin alpha chain family. (1035 aa)
	ITGB6	Integrin beta; Belongs to the integrin beta chain family. (808 aa)
	COL6A2	Collagen alpha-2(VI) chain isoform X1. (1027 aa)
	VTN	Vitronectin isoform X1. (565 aa)
	VCAN	Versican core protein isoform X1. (3395 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACAN	ASPN	A0A340YBY9	A0A340Y8V4	Aggrecan core protein.	Asporin isoform X1.	0.481
ACAN	BCAN	A0A340YBY9	A0A340X8N7	Aggrecan core protein.	Brevican core protein.	0.542
ACAN	BGN	A0A340YBY9	A0A340XCE3	Aggrecan core protein.	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.725
ACAN	COL2A1	A0A340YBY9	A0A340XXG8	Aggrecan core protein.	Collagen alpha-1(II) chain isoform X1.	0.705
ACAN	COL9A1	A0A340YBY9	A0A340WJI3	Aggrecan core protein.	Collagen alpha-1(IX) chain isoform X1.	0.467
ACAN	COL9A2	A0A340YBY9	A0A340X3U2	Aggrecan core protein.	Collagen alpha-2(IX) chain.	0.408
ACAN	COMP	A0A340YBY9	A0A340XQ49	Aggrecan core protein.	Cartilage oligomeric matrix protein isoform X1.	0.765
ACAN	DCN	A0A340YBY9	A0A340WQB2	Aggrecan core protein.	Decorin; May affect the rate of fibrils formation.	0.694
ACAN	HAPLN1	A0A340YBY9	A0A340WXF5	Aggrecan core protein.	Hyaluronan and proteoglycan link protein 1.	0.923
ACAN	ITGB1	A0A340YBY9	A0A340YIX2	Aggrecan core protein.	Integrin beta; Belongs to the integrin beta chain family.	0.462
ACAN	LOC103069249	A0A340YBY9	A0A340WPK2	Aggrecan core protein.	Collagen alpha-2(I) chain-like isoform X3.	0.446
ACAN	LOC103071971	A0A340YBY9	A0A340XY16	Aggrecan core protein.	Collagen alpha-1(I) chain-like.	0.604
ACAN	MATN1	A0A340YBY9	A0A340WP43	Aggrecan core protein.	Cartilage matrix protein.	0.459
ACAN	MATN3	A0A340YBY9	A0A340XWW7	Aggrecan core protein.	Matrilin-3.	0.583
ACAN	SPARC	A0A340YBY9	A0A340WKF4	Aggrecan core protein.	SPARC isoform X1.	0.440
ACAN	TNC	A0A340YBY9	A0A340WRT4	Aggrecan core protein.	Tenascin isoform X1.	0.741
ACAN	TNN	A0A340YBY9	A0A340WPI6	Aggrecan core protein.	tenascin-N.	0.538
ACAN	TNR	A0A340YBY9	A0A340WV07	Aggrecan core protein.	tenascin-R.	0.839
AGRN	BCAN	A0A340WHC4	A0A340X8N7	Agrin.	Brevican core protein.	0.603
AGRN	BGN	A0A340WHC4	A0A340XCE3	Agrin.	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.709