13 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HTR1A	5-hydroxytryptamine receptor 1A. (422 aa)
	HTR4	5-hydroxytryptamine receptor 4 isoform X1; Belongs to the G-protein coupled receptor 1 family. (402 aa)
	HTR2C	5-hydroxytryptamine receptor 2C. (458 aa)
	HTR1F	5-hydroxytryptamine receptor 1F. (365 aa)
	HTR5A	5-hydroxytryptamine receptor 5A. (357 aa)
	LOC103081045	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 5B-like. (370 aa)
	HTR1B	5-hydroxytryptamine receptor 1B. (399 aa)
	HTR6	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 6; Belongs to the G-protein coupled receptor 1 family. (440 aa)
	HTR2B	5-hydroxytryptamine receptor 2B. (537 aa)
	HTR7	5-hydroxytryptamine receptor 7 isoform X1; Belongs to the G-protein coupled receptor 1 family. (448 aa)
	HTR2A	5-hydroxytryptamine receptor 2A. (469 aa)
	HTR1E	5-hydroxytryptamine receptor 1E. (365 aa)
	HTR1D	LOW QUALITY PROTEIN: 5-hydroxytryptamine (Serotonin) receptor 1D, G protein-coupled. (377 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HTR1A	HTR2A	A0A340WEW7	A0A340XYQ4	5-hydroxytryptamine receptor 1A.	5-hydroxytryptamine receptor 2A.	0.427
HTR1B	HTR2A	A0A340XCB7	A0A340XYQ4	5-hydroxytryptamine receptor 1B.	5-hydroxytryptamine receptor 2A.	0.418
HTR1D	HTR2A	A0A340YFD4	A0A340XYQ4	LOW QUALITY PROTEIN: 5-hydroxytryptamine (Serotonin) receptor 1D, G protein-coupled.	5-hydroxytryptamine receptor 2A.	0.410
HTR1E	HTR5A	A0A340Y236	A0A340X7C7	5-hydroxytryptamine receptor 1E.	5-hydroxytryptamine receptor 5A.	0.454
HTR1E	LOC103081045	A0A340Y236	A0A340XBL5	5-hydroxytryptamine receptor 1E.	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 5B-like.	0.454
HTR1F	HTR5A	A0A340WVW2	A0A340X7C7	5-hydroxytryptamine receptor 1F.	5-hydroxytryptamine receptor 5A.	0.729
HTR1F	LOC103081045	A0A340WVW2	A0A340XBL5	5-hydroxytryptamine receptor 1F.	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 5B-like.	0.722
HTR2A	HTR1A	A0A340XYQ4	A0A340WEW7	5-hydroxytryptamine receptor 2A.	5-hydroxytryptamine receptor 1A.	0.427
HTR2A	HTR1B	A0A340XYQ4	A0A340XCB7	5-hydroxytryptamine receptor 2A.	5-hydroxytryptamine receptor 1B.	0.418
HTR2A	HTR1D	A0A340XYQ4	A0A340YFD4	5-hydroxytryptamine receptor 2A.	LOW QUALITY PROTEIN: 5-hydroxytryptamine (Serotonin) receptor 1D, G protein-coupled.	0.410
HTR2A	HTR2B	A0A340XYQ4	A0A340XN50	5-hydroxytryptamine receptor 2A.	5-hydroxytryptamine receptor 2B.	0.957
HTR2A	HTR2C	A0A340XYQ4	A0A340WNE2	5-hydroxytryptamine receptor 2A.	5-hydroxytryptamine receptor 2C.	0.963
HTR2B	HTR2A	A0A340XN50	A0A340XYQ4	5-hydroxytryptamine receptor 2B.	5-hydroxytryptamine receptor 2A.	0.957
HTR2B	HTR2C	A0A340XN50	A0A340WNE2	5-hydroxytryptamine receptor 2B.	5-hydroxytryptamine receptor 2C.	0.950
HTR2C	HTR2A	A0A340WNE2	A0A340XYQ4	5-hydroxytryptamine receptor 2C.	5-hydroxytryptamine receptor 2A.	0.963
HTR2C	HTR2B	A0A340WNE2	A0A340XN50	5-hydroxytryptamine receptor 2C.	5-hydroxytryptamine receptor 2B.	0.950
HTR4	HTR6	A0A340WJ23	A0A340XCU6	5-hydroxytryptamine receptor 4 isoform X1; Belongs to the G-protein coupled receptor 1 family.	LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 6; Belongs to the G-protein coupled receptor 1 family.	0.927
HTR4	HTR7	A0A340WJ23	A0A340XVZ4	5-hydroxytryptamine receptor 4 isoform X1; Belongs to the G-protein coupled receptor 1 family.	5-hydroxytryptamine receptor 7 isoform X1; Belongs to the G-protein coupled receptor 1 family.	0.926
HTR5A	HTR1E	A0A340X7C7	A0A340Y236	5-hydroxytryptamine receptor 5A.	5-hydroxytryptamine receptor 1E.	0.454
HTR5A	HTR1F	A0A340X7C7	A0A340WVW2	5-hydroxytryptamine receptor 5A.	5-hydroxytryptamine receptor 1F.	0.729