60 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103074679	Histone H2B; Belongs to the histone H2B family. (127 aa)
	CENPA	Histone H3-like centromeric protein A isoform X1. (138 aa)
	LOC103086798	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103080928	Histone H2A; Belongs to the histone H2A family. (130 aa)
	LOC103076894	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103085592	Nucleophosmin-like isoform X1. (294 aa)
	LOC103088169	Histone H2B; Belongs to the histone H2B family. (127 aa)
	LOC103082925	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103081667	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	LOC103079101	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103076354	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	CENPI	LOW QUALITY PROTEIN: centromere protein I. (753 aa)
	CENPP	Centromere protein P. (288 aa)
	RBBP4	Histone-binding protein RBBP4 isoform X1. (425 aa)
	MIS18BP1	LOW QUALITY PROTEIN: mis18-binding protein 1. (1060 aa)
	CENPU	Centromere protein U. (411 aa)
	LOC103089645	Histone H2A; Belongs to the histone H2A family. (128 aa)
	RUVBL1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	LOC103081970	Histone H2A; Belongs to the histone H2A family. (129 aa)
	NPM1	Nucleophosmin isoform X1. (301 aa)
	LOC103081704	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103080427	Histone H2B; Belongs to the histone H2B family. (126 aa)
	ITGB3BP	Centromere protein R. (242 aa)
	APITD1	Centromere protein S. (139 aa)
	LOC103081255	Histone H2B; Belongs to the histone H2B family. (142 aa)
	LOC103079884	Histone H2A; Belongs to the histone H2A family. (130 aa)
	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (1052 aa)
	STRA13	Centromere protein X. (79 aa)
	CASC5	LOW QUALITY PROTEIN: protein CASC5. (2349 aa)
	OIP5	Protein Mis18-beta. (229 aa)
	CENPH	Centromere protein H. (245 aa)
	LOC103085965	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103077443	Histone H2A; Belongs to the histone H2A family. (130 aa)
	CENPL	Centromere protein L. (346 aa)
	HJURP	LOW QUALITY PROTEIN: Holliday junction recognition protein. (805 aa)
	LOC103088445	Histone H2A; Belongs to the histone H2A family. (117 aa)
	LOC103090400	Histone H2B; Belongs to the histone H2B family. (126 aa)
	RSF1	LOW QUALITY PROTEIN: remodeling and spacing factor 1. (1440 aa)
	CENPT	Centromere protein T. (563 aa)
	LOC103074978	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	CENPK	Centromere protein K. (208 aa)
	RBBP7	Histone-binding protein RBBP7 isoform X1. (469 aa)
	CENPO	Centromere protein O. (300 aa)
	CENPM	Centromere protein M isoform X1. (180 aa)
	LOC103074048	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (134 aa)
	CENPN	Centromere protein N isoform X1. (390 aa)
	LOC103080676	Histone H2A; Belongs to the histone H2A family. (129 aa)
	CENPC	Centromere protein C. (940 aa)
	SMARCA1	Probable global transcription activator SNF2L1 isoform X1. (1070 aa)
	LOC103079983	Histone H2A; Belongs to the histone H2A family. (128 aa)
	MIS18A	Protein Mis18-alpha. (236 aa)
	CENPW	Centromere protein W isoform X1. (88 aa)
	LOC103071163	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103070340	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103071706	Histone H2A; Belongs to the histone H2A family. (130 aa)
	LOC103071989	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103073911	Histone H2B; Belongs to the histone H2B family. (126 aa)
	CENPQ	Centromere protein Q. (267 aa)
	LOC103080666	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC103076624	Histone H2B; Belongs to the histone H2B family. (126 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APITD1	CASC5	A0A340XV37	A0A340XFM3	Centromere protein S.	LOW QUALITY PROTEIN: protein CASC5.	0.601
APITD1	CENPA	A0A340XV37	A0A340YFQ9	Centromere protein S.	Histone H3-like centromeric protein A isoform X1.	0.795
APITD1	CENPC	A0A340XV37	A0A340WYR4	Centromere protein S.	Centromere protein C.	0.946
APITD1	CENPH	A0A340XV37	A0A340XDN1	Centromere protein S.	Centromere protein H.	0.954
APITD1	CENPI	A0A340XV37	A0A340Y984	Centromere protein S.	LOW QUALITY PROTEIN: centromere protein I.	0.959
APITD1	CENPK	A0A340XV37	A0A340X6I8	Centromere protein S.	Centromere protein K.	0.958
APITD1	CENPL	A0A340XV37	A0A340YHW4	Centromere protein S.	Centromere protein L.	0.949
APITD1	CENPM	A0A340XV37	A0A340X264	Centromere protein S.	Centromere protein M isoform X1.	0.957
APITD1	CENPN	A0A340XV37	A0A340X0G7	Centromere protein S.	Centromere protein N isoform X1.	0.959
APITD1	CENPP	A0A340XV37	A0A340Y8V9	Centromere protein S.	Centromere protein P.	0.933
APITD1	CENPQ	A0A340XV37	A0A340WSW4	Centromere protein S.	Centromere protein Q.	0.961
APITD1	CENPT	A0A340XV37	A0A340X6Z1	Centromere protein S.	Centromere protein T.	0.987
APITD1	CENPU	A0A340XV37	A0A340Y287	Centromere protein S.	Centromere protein U.	0.960
APITD1	CENPW	A0A340XV37	A0A340WLQ1	Centromere protein S.	Centromere protein W isoform X1.	0.988
APITD1	HJURP	A0A340XV37	A0A340YHC3	Centromere protein S.	LOW QUALITY PROTEIN: Holliday junction recognition protein.	0.721
APITD1	ITGB3BP	A0A340XV37	A0A340XVZ2	Centromere protein S.	Centromere protein R.	0.885
APITD1	LOC103074048	A0A340XV37	A0A340X140	Centromere protein S.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.400
APITD1	LOC103074978	A0A340XV37	A0A340WSY6	Centromere protein S.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.414
APITD1	LOC103076354	A0A340XV37	A0A340YC82	Centromere protein S.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.414
APITD1	LOC103081667	A0A340XV37	A0A340YCA2	Centromere protein S.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.414