STRINGSTRING
LOC103081907 LOC103081907 RAE1 RAE1 CDC40 CDC40 CPSF4 CPSF4 AAAS AAAS SRSF9 SRSF9 NUPL2 NUPL2 FYTTD1 FYTTD1 LOC103091535 LOC103091535 LOC103089036 LOC103089036 NUP155 NUP155 THOC1 THOC1 THOC2 THOC2 SRSF7 SRSF7 NUP133 NUP133 THOC7 THOC7 SRSF1 SRSF1 LOC103076205 LOC103076205 NUP98 NUP98 EIF4E1B EIF4E1B NUP107 NUP107 EIF4E EIF4E SLU7 SLU7 CHTOP CHTOP CPSF1 CPSF1 NXT2 NXT2 THOC5 THOC5 EIF4A3 EIF4A3 NUP62 NUP62 LOC103088746 LOC103088746 WDR33 WDR33 NXF1 NXF1 LOC103082863 LOC103082863 THOC3 THOC3 DHX38 DHX38 ALYREF ALYREF NUP153 NUP153 NUP43 NUP43 SYMPK SYMPK LOC103069469 LOC103069469 NUP210L NUP210L LOC103069667 LOC103069667 SEH1L SEH1L LOC103068724 LOC103068724 NUP210 NUP210 DDX39B DDX39B SREK1 SREK1 RBM8A RBM8A RANBP2 RANBP2 NUP160 NUP160 NUP54 NUP54 NXT1 NXT1 FIP1L1 FIP1L1 CPSF3 CPSF3 LOC103085427 LOC103085427 LOC103078847 LOC103078847 NUP35 NUP35 SRSF5 SRSF5 NCBP1 NCBP1 CPSF2 CPSF2 POLDIP3 POLDIP3 NUP85 NUP85 RNPS1 RNPS1 CPSF4L CPSF4L SEC13 SEC13 UPF3B UPF3B NUP50 NUP50 LOC103076695 LOC103076695 NUP214 NUP214 THOC6 THOC6 TPR TPR U2AF1 U2AF1 NUP37 NUP37 NUP88 NUP88 NCBP2 NCBP2 LOC103090438 LOC103090438 NUP205 NUP205 NUP93 NUP93 SLBP SLBP LOC103080452 LOC103080452 LOC103075696 LOC103075696 SARNP SARNP U2AF2 U2AF2 ZC3H11A ZC3H11A POM121C POM121C LOC103069243 LOC103069243 LOC103073367 LOC103073367 U2AF1L4 U2AF1L4 NDC1 NDC1 DDX39A DDX39A MAGOHB MAGOHB NUPL1 NUPL1 MAGOH MAGOH NUP188 NUP188 SRSF11 SRSF11 CASC3 CASC3 GLE1 GLE1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC103081907Uncharacterized protein C12orf50 homolog isoform X1. (415 aa)
RAE1mRNA export factor. (368 aa)
CDC40pre-mRNA-processing factor 17. (579 aa)
CPSF4Cleavage and polyadenylation specificity factor subunit 4 isoform X1. (269 aa)
AAASAladin. (506 aa)
SRSF9Serine/arginine-rich splicing factor 9. (221 aa)
NUPL2Nucleoporin-like protein 2. (420 aa)
FYTTD1UAP56-interacting factor. (320 aa)
LOC103091535THO complex subunit 3-like. (141 aa)
LOC103089036Chromatin target of PRMT1 protein-like. (249 aa)
NUP155Nuclear pore complex protein Nup155 isoform X1. (1391 aa)
THOC1THO complex subunit 1. (657 aa)
THOC2THO complex subunit 2. (1593 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
NUP133Nuclear pore complex protein Nup133. (1156 aa)
THOC7THO complex subunit 7 homolog isoform X1. (214 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X2. (253 aa)
LOC103076205Nuclear cap-binding protein subunit 1-like. (488 aa)
NUP98Nuclear pore complex protein Nup98-Nup96. (1817 aa)
EIF4E1BEukaryotic translation initiation factor 4E type 1B; Belongs to the eukaryotic initiation factor 4E family. (236 aa)
NUP107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (927 aa)
EIF4EEukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (230 aa)
SLU7pre-mRNA-splicing factor SLU7. (603 aa)
CHTOPChromatin target of PRMT1 protein isoform X1. (277 aa)
CPSF1Cleavage and polyadenylation specificity factor subunit 1. (1449 aa)
NXT2NTF2-related export protein 2. (141 aa)
THOC5THO complex subunit 5 homolog. (683 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
NUP62Nuclear pore glycoprotein p62. (516 aa)
LOC103088746Oocyte-specific histone RNA stem-loop-binding protein 2-like isoform X1. (204 aa)
WDR33pre-mRNA 3' end processing protein WDR33 isoform X1. (1335 aa)
NXF1Nuclear RNA export factor 1 isoform X1. (623 aa)
LOC103082863Nuclear pore membrane glycoprotein 210-like. (1246 aa)
THOC3THO complex subunit 3. (209 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1227 aa)
ALYREFTHO complex subunit 4. (302 aa)
NUP153Nuclear pore complex protein Nup153 isoform X1. (1476 aa)
NUP43Nucleoporin Nup43. (380 aa)
SYMPKSymplekin. (1277 aa)
LOC103069469Serine/arginine repetitive matrix protein 1-like. (729 aa)
NUP210LNuclear pore membrane glycoprotein 210-like isoform X1. (1887 aa)
LOC103069667Nuclear RNA export factor 3-like. (513 aa)
SEH1LNucleoporin SEH1 isoform X1; Belongs to the WD repeat SEC13 family. (423 aa)
LOC103068724Nuclear RNA export factor 2-like. (235 aa)
NUP210Nuclear pore membrane glycoprotein 210-like. (646 aa)
DDX39BSpliceosome RNA helicase DDX39B isoform X1. (522 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1 isoform X1. (629 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
RANBP2E3 SUMO-protein ligase RanBP2 isoform X1. (3093 aa)
NUP160Nuclear pore complex protein Nup160. (1402 aa)
NUP54Nuclear pore complex protein Nup54 isoform X1. (510 aa)
NXT1NTF2-related export protein 1. (140 aa)
FIP1L1pre-mRNA 3'-end-processing factor FIP1 isoform X1. (604 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3 isoform X1. (684 aa)
LOC103085427Nuclear pore glycoprotein p62-like. (328 aa)
LOC103078847Nuclear RNA export factor 2-like. (439 aa)
NUP35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (327 aa)
SRSF5Serine/arginine-rich splicing factor 5 isoform X1. (274 aa)
NCBP1Nuclear cap-binding protein subunit 1-like. (299 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (421 aa)
NUP85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (656 aa)
RNPS1RNA-binding protein with serine-rich domain 1. (305 aa)
CPSF4LCleavage and polyadenylation specificity factor subunit 4. (180 aa)
SEC13Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (172 aa)
UPF3BRegulator of nonsense transcripts 3B isoform X1. (490 aa)
NUP50LOW QUALITY PROTEIN: nuclear pore complex protein Nup50. (476 aa)
LOC103076695Uncharacterized protein LOC103076695. (373 aa)
NUP214Nuclear pore complex protein Nup214. (2096 aa)
THOC6THO complex subunit 6 homolog isoform X1. (341 aa)
TPRNucleoprotein TPR. (2357 aa)
U2AF1Splicing factor U2AF 35 kDa subunit isoform X1. (164 aa)
NUP37Nucleoporin Nup37. (326 aa)
NUP88Nuclear pore complex protein Nup88. (743 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
LOC103090438Nuclear RNA export factor 3-like. (320 aa)
NUP205Nuclear pore complex protein Nup205. (2012 aa)
NUP93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (827 aa)
SLBPHistone RNA hairpin-binding protein. (275 aa)
LOC103080452Serine/arginine-rich splicing factor 3-like. (164 aa)
LOC103075696LOW QUALITY PROTEIN: protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (345 aa)
SARNPSAP domain-containing ribonucleoprotein. (210 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A. (816 aa)
POM121CNuclear envelope pore membrane protein POM 121C. (1219 aa)
LOC103069243Leucine zipper protein 4-like. (345 aa)
LOC103073367Uncharacterized protein C20orf196 homolog. (225 aa)
U2AF1L4Splicing factor U2AF 26 kDa subunit isoform X1. (220 aa)
NDC1Nucleoporin NDC1 isoform X1. (675 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
MAGOHBProtein mago nashi homolog 2. (148 aa)
NUPL1Nucleoporin p58/p45. (454 aa)
MAGOHProtein mago nashi homolog isoform X1. (146 aa)
NUP188Nucleoporin NUP188 homolog. (1554 aa)
SRSF11Serine/arginine-rich splicing factor 11 isoform X1. (484 aa)
CASC3LOW QUALITY PROTEIN: cancer susceptibility candidate 3. (708 aa)
GLE1Nucleoporin GLE1. (698 aa)
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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