STRINGSTRING
LOC103085965 LOC103085965 LOC103077443 LOC103077443 PRIM2 PRIM2 HJURP HJURP CENPL CENPL LOC103088445 LOC103088445 LOC103080666 LOC103080666 LOC103076624 LOC103076624 LOC103074679 LOC103074679 CENPA CENPA ANKRD28 ANKRD28 ANKRD66 ANKRD66 BLM BLM LOC103082191 LOC103082191 LOC103086798 LOC103086798 LOC103080928 LOC103080928 LOC103076894 LOC103076894 TERT TERT LOC103085592 LOC103085592 PPP6C PPP6C TRUB1 TRUB1 LOC103088169 LOC103088169 LOC103082925 LOC103082925 LOC103081667 LOC103081667 LOC103079101 LOC103079101 LOC103076354 LOC103076354 OBFC1 OBFC1 RFC2 RFC2 LOC103068676 LOC103068676 CENPI CENPI LOC103068403 LOC103068403 CENPP CENPP CDK2 CDK2 RBBP4 RBBP4 RCBTB2 RCBTB2 RCBTB1 RCBTB1 PRIM1 PRIM1 LOC103070776 LOC103070776 MIS18BP1 MIS18BP1 CENPU CENPU DKC1 DKC1 RECQL4 RECQL4 RUVBL1 RUVBL1 CCNA1 CCNA1 WRAP53 WRAP53 CTC1 CTC1 LOC103090400 LOC103090400 DNA2 DNA2 CENPH CENPH OIP5 OIP5 CASC5 CASC5 DAXX DAXX STRA13 STRA13 POLA2 POLA2 RUVBL2 RUVBL2 FEN1 FEN1 SMARCA5 SMARCA5 LOC103073911 LOC103073911 PPP6R3 PPP6R3 POT1 POT1 LOC103071163 LOC103071163 POLD4 POLD4 PIF1 PIF1 LOC103079983 LOC103079983 POLA1 POLA1 POLD2 POLD2 ATRX ATRX MIS18A MIS18A TERF2IP TERF2IP NHP2 NHP2 RTEL1 RTEL1 LIG1 LIG1 LOC103079884 LOC103079884 SHQ1 SHQ1 LOC103081255 LOC103081255 NOP10 NOP10 CCNA2 CCNA2 WRN WRN RFC1 RFC1 RPA3 RPA3 LOC103070340 LOC103070340 LOC103071706 LOC103071706 TERF2 TERF2 LOC103071989 LOC103071989 TINF2 TINF2 CENPW CENPW LOC103087596 LOC103087596 POLD3 POLD3 LOC103076424 LOC103076424 LOC103073365 LOC103073365 CENPQ CENPQ LOC103074978 LOC103074978 PCNA PCNA SMARCA1 SMARCA1 RBPMS2 RBPMS2 RFC4 RFC4 LOC103081391 LOC103081391 CHTF18 CHTF18 DSCC1 DSCC1 TERF1 TERF1 APITD1 APITD1 GAR1 GAR1 RFC3 RFC3 POLD1 POLD1 ITGB3BP ITGB3BP LOC103080427 LOC103080427 LOC103081704 LOC103081704 NPM1 NPM1 LOC103081970 LOC103081970 ANKRD44 ANKRD44 LOC103089645 LOC103089645 CDK3 CDK3 LOC103076444 LOC103076444 EXD2 EXD2 CENPC CENPC LOC103080676 LOC103080676 CENPN CENPN LOC103074048 LOC103074048 CENPM CENPM PPP6R2 PPP6R2 MEIOB MEIOB TEN1 TEN1 RPA1 RPA1 CENPO CENPO RBBP7 RBBP7 CENPK CENPK CENPT CENPT LOC103088283 LOC103088283 RFC5 RFC5 ACD ACD RSF1 RSF1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC103085965Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103077443Histone H2A; Belongs to the histone H2A family. (130 aa)
PRIM2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (506 aa)
HJURPLOW QUALITY PROTEIN: Holliday junction recognition protein. (805 aa)
CENPLCentromere protein L. (346 aa)
LOC103088445Histone H2A; Belongs to the histone H2A family. (117 aa)
LOC103080666Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103076624Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103074679Histone H2B; Belongs to the histone H2B family. (127 aa)
CENPAHistone H3-like centromeric protein A isoform X1. (138 aa)
ANKRD28Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X2. (1086 aa)
ANKRD66LOW QUALITY PROTEIN: ankyrin repeat domain 66. (198 aa)
BLMBloom syndrome protein isoform X1. (1430 aa)
LOC103082191H/ACA ribonucleoprotein complex subunit 3-like. (64 aa)
LOC103086798Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103080928Histone H2A; Belongs to the histone H2A family. (130 aa)
LOC103076894Histone H2B; Belongs to the histone H2B family. (126 aa)
TERTTelomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. Active in progenitor and cancer cells. Inactive, or very low activity, in normal somatic cells. Catalytic component of the teleromerase holoenzyme complex whose main activity is the elongation of telomeres by acting as a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. Catalyzes the RNA-dependent extension of 3'-chromosomal termini with the 6-nuc [...] (1127 aa)
LOC103085592Nucleophosmin-like isoform X1. (294 aa)
PPP6CSerine/threonine-protein phosphatase. (349 aa)
TRUB1Probable tRNA pseudouridine synthase 1. (348 aa)
LOC103088169Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC103082925Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103081667Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC103079101Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103076354Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
OBFC1CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (368 aa)
RFC2Replication factor C subunit 2 isoform X1. (352 aa)
LOC103068676Histone H2B type W-T-like; Belongs to the histone H2B family. (177 aa)
CENPILOW QUALITY PROTEIN: centromere protein I. (753 aa)
LOC103068403Histone H2B type W-T-like; Belongs to the histone H2B family. (184 aa)
CENPPCentromere protein P. (288 aa)
CDK2Cyclin-dependent kinase 2 isoform X1; Belongs to the protein kinase superfamily. (346 aa)
RBBP4Histone-binding protein RBBP4 isoform X1. (425 aa)
RCBTB2RCC1 and BTB domain-containing protein 2 isoform X1. (572 aa)
RCBTB1RCC1 and BTB domain-containing protein 1. (531 aa)
PRIM1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (419 aa)
LOC103070776Histone H3-like centromeric protein CSE4-like. (277 aa)
MIS18BP1LOW QUALITY PROTEIN: mis18-binding protein 1. (1060 aa)
CENPUCentromere protein U. (411 aa)
DKC1H/ACA ribonucleoprotein complex subunit 4. (420 aa)
RECQL4ATP-dependent DNA helicase Q4. (1224 aa)
RUVBL1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
CCNA1cyclin-A1; Belongs to the cyclin family. (421 aa)
WRAP53Telomerase Cajal body protein 1 isoform X2. (543 aa)
CTC1CST complex subunit CTC1. (1210 aa)
LOC103090400Histone H2B; Belongs to the histone H2B family. (126 aa)
DNA2DNA replication ATP-dependent helicase/nuclease DNA2. (1063 aa)
CENPHCentromere protein H. (245 aa)
OIP5Protein Mis18-beta. (229 aa)
CASC5LOW QUALITY PROTEIN: protein CASC5. (2349 aa)
DAXXDeath domain-associated protein 6. (757 aa)
STRA13Centromere protein X. (79 aa)
POLA2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (598 aa)
RUVBL2RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (463 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
SMARCA5SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (1052 aa)
LOC103073911Histone H2B; Belongs to the histone H2B family. (126 aa)
PPP6R3Serine/threonine-protein phosphatase 6 regulatory subunit 3. (632 aa)
POT1Protection of telomeres protein 1. (785 aa)
LOC103071163Histone H2B; Belongs to the histone H2B family. (126 aa)
POLD4DNA polymerase delta subunit 4. (107 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. Efficiently unwinds G-quadruplex (G4) DNA structures and forked RNA-DNA hybrids. Resolves G4 structures, preventing replication pausing and double-strand breaks (DSBs) at G4 motifs. Involved in the maintenance of telomeric DNA. Inhibits telomere elongation, de novo telomere formation and telomere addition to DSBs via catalytic inhibition of telomerase. Reduces the processivity of telomerase by displacing active telomerase from DNA [...] (641 aa)
LOC103079983Histone H2A; Belongs to the histone H2A family. (128 aa)
POLA1DNA polymerase. (1462 aa)
POLD2DNA polymerase delta subunit 2 isoform X1. (469 aa)
ATRXTranscriptional regulator ATRX. (2485 aa)
MIS18AProtein Mis18-alpha. (236 aa)
TERF2IPTelomeric repeat-binding factor 2-interacting protein 1. (399 aa)
NHP2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (153 aa)
RTEL1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1249 aa)
LIG1DNA ligase. (921 aa)
LOC103079884Histone H2A; Belongs to the histone H2A family. (130 aa)
SHQ1LOW QUALITY PROTEIN: protein SHQ1 homolog. (578 aa)
LOC103081255Histone H2B; Belongs to the histone H2B family. (142 aa)
NOP10H/ACA ribonucleoprotein complex subunit 3. (73 aa)
CCNA2cyclin-A2; Belongs to the cyclin family. (432 aa)
WRNLOW QUALITY PROTEIN: Werner syndrome ATP-dependent helicase. (1439 aa)
RFC1Replication factor C subunit 1. (1245 aa)
RPA3Replication protein A 14 kDa subunit. (121 aa)
LOC103070340Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103071706Histone H2A; Belongs to the histone H2A family. (130 aa)
TERF2Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (539 aa)
LOC103071989Histone H2B; Belongs to the histone H2B family. (126 aa)
TINF2TERF1-interacting nuclear factor 2. (453 aa)
CENPWCentromere protein W isoform X1. (88 aa)
LOC103087596H/ACA ribonucleoprotein complex subunit 3-like. (83 aa)
POLD3DNA polymerase delta subunit 3. (469 aa)
LOC103076424Histone H3.3-like. (136 aa)
LOC103073365Chromosome transmission fidelity protein 8 homolog. (121 aa)
CENPQCentromere protein Q. (267 aa)
LOC103074978Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
SMARCA1Probable global transcription activator SNF2L1 isoform X1. (1070 aa)
RBPMS2RNA-binding protein with multiple splicing 2. (212 aa)
RFC4Replication factor C subunit 4. (364 aa)
LOC103081391Histone H3.3-like. (172 aa)
CHTF18Chromosome transmission fidelity protein 18 homolog. (978 aa)
DSCC1Sister chromatid cohesion protein DCC1. (392 aa)
TERF1Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (437 aa)
APITD1Centromere protein S. (139 aa)
GAR1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (221 aa)
RFC3Replication factor C subunit 3. (356 aa)
POLD1DNA polymerase. (1107 aa)
ITGB3BPCentromere protein R. (242 aa)
LOC103080427Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC103081704Histone H2B; Belongs to the histone H2B family. (126 aa)
NPM1Nucleophosmin isoform X1. (301 aa)
LOC103081970Histone H2A; Belongs to the histone H2A family. (129 aa)
ANKRD44Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X1. (986 aa)
LOC103089645Histone H2A; Belongs to the histone H2A family. (128 aa)
CDK3Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily. (305 aa)
LOC103076444Histone H3; Belongs to the histone H3 family. (136 aa)
EXD2Exonuclease 3'-5' domain-containing protein 2. (623 aa)
CENPCCentromere protein C. (940 aa)
LOC103080676Histone H2A; Belongs to the histone H2A family. (129 aa)
CENPNCentromere protein N isoform X1. (390 aa)
LOC103074048Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (134 aa)
CENPMCentromere protein M isoform X1. (180 aa)
PPP6R2Serine/threonine-protein phosphatase 6 regulatory subunit 2. (933 aa)
MEIOBMeiosis-specific with OB domain-containing protein isoform X1. (471 aa)
TEN1CST complex subunit TEN1. (123 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (617 aa)
CENPOCentromere protein O. (300 aa)
RBBP7Histone-binding protein RBBP7 isoform X1. (469 aa)
CENPKCentromere protein K. (208 aa)
CENPTCentromere protein T. (563 aa)
LOC103088283Serine/threonine-protein phosphatase 6 regulatory subunit 3-like. (144 aa)
RFC5Replication factor C subunit 5. (342 aa)
ACDAdrenocortical dysplasia protein homolog. (454 aa)
RSF1LOW QUALITY PROTEIN: remodeling and spacing factor 1. (1440 aa)
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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