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rpoD rpoD rpoS-3 rpoS-3 rpoE-3 rpoE-3 rpoE-2 rpoE-2 sigB sigB rpoS-2 rpoS-2 rpoE-1 rpoE-1 rpoS-1 rpoS-1 rpoE-4 rpoE-4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoDRNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (374 aa)
rpoS-3RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (386 aa)
rpoE-3RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (214 aa)
rpoE-2RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
sigBRNA polymerase sigma factor, sigma-70 family. (268 aa)
rpoS-2RNA polymerase sigma factor SigD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (321 aa)
rpoE-1RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)
rpoS-1RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (348 aa)
rpoE-4RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
Your Current Organism:
Gloeomargarita lithophora
NCBI taxonomy Id: 1188229
Other names: Candidatus Gloeomargarita lithophora D10, G. lithophora Alchichica-D10, Gloeomargarita lithophora Alchichica-D10, Gloeomargarita lithophora PMC 919.15
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