(48 nodes) Cell projection organization network (Ferriphaselus amnicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAO32556.1	Hypothetical protein. (217 aa)
	flhB_1	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (383 aa)
	flhC	Flagellar transcriptional regulator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. (180 aa)
	flhD	Flagellar transcriptional regulator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (106 aa)
	fliW	Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. (146 aa)
	outD	Type II secretion system protein D precursor; Belongs to the bacterial secretin family. (601 aa)
	epsE_2	Type II secretion system protein E. (564 aa)
	GAO32295.1	Hypothetical protein. (169 aa)
	GAO32297.1	Unnamed protein product; fimbrial assembly protein (PilN). (184 aa)
	pulD_1	Type II secretion system protein D precursor. (615 aa)
	epsE_3	Type II secretion system protein E. (567 aa)
	fliS	Flagellar protein FliS. (149 aa)
	fliT	Flagellar protein FliT. (106 aa)
	GAO32362.1	Flagellar hook-length control protein FliK. (337 aa)
	pilT_2	Twitching mobility protein. (347 aa)
	flgK	Flagellar hook-associated protein 1. (645 aa)
	flgJ	Peptidoglycan hydrolase FlgJ. (282 aa)
	flgD	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein. (230 aa)
	flgA	Flagella basal body P-ring formation protein FlgA precursor; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (224 aa)
	GAO32914.1	Anti-sigma-28 factor, FlgM. (48 aa)
	GAO32915.1	flgN protein. (149 aa)
	flhF	Flagellar biosynthesis protein FlhF. (424 aa)
	flhA	Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (694 aa)
	fliI	Flagellum-specific ATP synthase. (469 aa)
	fliJ	Flagellar FliJ protein. (152 aa)
	fliK	Flagellar hook-length control protein. (367 aa)
	fliO	Flagellar protein FliO. (148 aa)
	fliP	Flagellar biosynthetic protein FliP precursor; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (248 aa)
	fliQ	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
	fliR	Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (262 aa)
	GAO33031.1	Hypothetical protein. (141 aa)
	GAO33326.1	Unnamed protein product; fimbrial assembly protein (PilN). (194 aa)
	GAO33327.1	Pilus assembly protein, PilO. (209 aa)
	GAO33328.1	Pilus assembly protein, PilP. (169 aa)
	GAO33356.1	Hypothetical protein. (187 aa)
	epsE_5	Type II secretion system protein E. (558 aa)
	GAO33568.1	CHAT domain protein. (654 aa)
	epsE_6	Type II secretion system protein E. (792 aa)
	ycf3_1	Photosystem I assembly protein Ycf3. (1176 aa)
	ycf3_2	Photosystem I assembly protein Ycf3. (1433 aa)
	GAO33744.1	Photosystem I assembly protein Ycf3. (1461 aa)
	GAO33980.1	Hypothetical protein. (217 aa)
	fimA_1	Fimbrial protein precursor. (141 aa)
	GAO34147.1	Hypothetical protein. (142 aa)
	GAO34148.1	Hypothetical protein. (252 aa)
	GAO34149.1	Hypothetical protein. (236 aa)
	GAO34506.1	Hypothetical protein. (187 aa)
	epsE_7	Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (491 aa)

Your Current Organism:

Ferriphaselus amnicola

NCBI taxonomy Id: 1188319
Other names: DSM 26810, F. amnicola, Ferriphaselus amnicola Kato et al. 2014, JCM 18545, beta proteobacterium OYT1, strain OYT1

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAO32295.1	GAO32297.1	OYT1_00320	OYT1_00322	Hypothetical protein.	Unnamed protein product; fimbrial assembly protein (PilN).	0.773
GAO32295.1	GAO32556.1	OYT1_00320	OYT1_00584	Hypothetical protein.	Hypothetical protein.	0.460
GAO32295.1	GAO33980.1	OYT1_00320	OYT1_02043	Hypothetical protein.	Hypothetical protein.	0.460
GAO32295.1	GAO34147.1	OYT1_00320	OYT1_02213	Hypothetical protein.	Hypothetical protein.	0.565
GAO32295.1	GAO34148.1	OYT1_00320	OYT1_02214	Hypothetical protein.	Hypothetical protein.	0.460
GAO32295.1	epsE_3	OYT1_00320	OYT1_00328	Hypothetical protein.	Type II secretion system protein E.	0.659
GAO32295.1	fimA_1	OYT1_00320	OYT1_02211	Hypothetical protein.	Fimbrial protein precursor.	0.550
GAO32295.1	pulD_1	OYT1_00320	OYT1_00325	Hypothetical protein.	Type II secretion system protein D precursor.	0.741
GAO32297.1	GAO32295.1	OYT1_00322	OYT1_00320	Unnamed protein product; fimbrial assembly protein (PilN).	Hypothetical protein.	0.773
GAO32297.1	GAO33327.1	OYT1_00322	OYT1_01377	Unnamed protein product; fimbrial assembly protein (PilN).	Pilus assembly protein, PilO.	0.815
GAO32297.1	GAO33328.1	OYT1_00322	OYT1_01378	Unnamed protein product; fimbrial assembly protein (PilN).	Pilus assembly protein, PilP.	0.683
GAO32297.1	GAO33356.1	OYT1_00322	OYT1_01406	Unnamed protein product; fimbrial assembly protein (PilN).	Hypothetical protein.	0.684
GAO32297.1	GAO34506.1	OYT1_00322	OYT1_02576	Unnamed protein product; fimbrial assembly protein (PilN).	Hypothetical protein.	0.683
GAO32297.1	epsE_3	OYT1_00322	OYT1_00328	Unnamed protein product; fimbrial assembly protein (PilN).	Type II secretion system protein E.	0.794
GAO32297.1	pulD_1	OYT1_00322	OYT1_00325	Unnamed protein product; fimbrial assembly protein (PilN).	Type II secretion system protein D precursor.	0.796
GAO32362.1	GAO32915.1	OYT1_00387	OYT1_00958	Flagellar hook-length control protein FliK.	flgN protein.	0.861
GAO32362.1	GAO33356.1	OYT1_00387	OYT1_01406	Flagellar hook-length control protein FliK.	Hypothetical protein.	0.580
GAO32362.1	flgA	OYT1_00387	OYT1_00810	Flagellar hook-length control protein FliK.	Flagella basal body P-ring formation protein FlgA precursor; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.	0.776
GAO32362.1	flgD	OYT1_00387	OYT1_00807	Flagellar hook-length control protein FliK.	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.854
GAO32362.1	flgJ	OYT1_00387	OYT1_00801	Flagellar hook-length control protein FliK.	Peptidoglycan hydrolase FlgJ.	0.965