(9 nodes) Mixed, incl. Small ribosomal subunit, and K Homology domain, type 2 network (Anaerorhabdus furcosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsZ	Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa)
	rpsJ	Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
	rpsF	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (96 aa)
	rpsG	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
	rpsI	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (135 aa)
	SJZ50761.1	Nucleoside diphosphate kinase. (148 aa)
	era	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (298 aa)
	rpsB	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (349 aa)
	rpsO	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (88 aa)

Your Current Organism:

Anaerorhabdus furcosa

NCBI taxonomy Id: 118967
Other names: A. furcosa, ATCC 25662, Bacillus furcosus, Bacteroides furcosus, Fusiformis furcosus, Pseudobacterium furcosum, Ristella furcosa, VPI 3253

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ50761.1	era	SAMN02745191_0778	SAMN02745191_1501	Nucleoside diphosphate kinase.	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.999
SJZ50761.1	rpsB	SAMN02745191_0778	SAMN02745191_1597	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
SJZ50761.1	rpsF	SAMN02745191_0778	SAMN02745191_0327	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
SJZ50761.1	rpsG	SAMN02745191_0778	SAMN02745191_0418	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
SJZ50761.1	rpsI	SAMN02745191_0778	SAMN02745191_0709	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
SJZ50761.1	rpsJ	SAMN02745191_0778	SAMN02745191_0038	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
SJZ50761.1	rpsO	SAMN02745191_0778	SAMN02745191_1888	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
SJZ50761.1	rpsZ	SAMN02745191_0778	SAMN02745191_0024	Nucleoside diphosphate kinase.	Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.999
era	SJZ50761.1	SAMN02745191_1501	SAMN02745191_0778	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Nucleoside diphosphate kinase.	0.999
era	rpsB	SAMN02745191_1501	SAMN02745191_1597	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
era	rpsF	SAMN02745191_1501	SAMN02745191_0327	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
era	rpsG	SAMN02745191_1501	SAMN02745191_0418	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
era	rpsI	SAMN02745191_1501	SAMN02745191_0709	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
era	rpsJ	SAMN02745191_1501	SAMN02745191_0038	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
era	rpsO	SAMN02745191_1501	SAMN02745191_1888	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
era	rpsZ	SAMN02745191_1501	SAMN02745191_0024	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.999
rpsB	SJZ50761.1	SAMN02745191_1597	SAMN02745191_0778	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Nucleoside diphosphate kinase.	0.999
rpsB	era	SAMN02745191_1597	SAMN02745191_1501	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.999
rpsB	rpsF	SAMN02745191_1597	SAMN02745191_0327	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsB	rpsG	SAMN02745191_1597	SAMN02745191_0418	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About