Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHM54221.1 | SHN08911.1 | SAMN05216593_101443 | SAMN05216593_107147 | UvrD/REP helicase N-terminal domain-containing protein. | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.674 |
| SHM54221.1 | SHN12489.1 | SAMN05216593_101443 | SAMN05216593_108199 | UvrD/REP helicase N-terminal domain-containing protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.674 |
| SHM54221.1 | SHN20923.1 | SAMN05216593_101443 | SAMN05216593_11398 | UvrD/REP helicase N-terminal domain-containing protein. | UvrD/REP helicase N-terminal domain-containing protein. | 0.600 |
| SHM54221.1 | SHN24902.1 | SAMN05216593_101443 | SAMN05216593_11766 | UvrD/REP helicase N-terminal domain-containing protein. | ATP-dependent DNA helicase RecQ. | 0.912 |
| SHM54221.1 | SHN28729.1 | SAMN05216593_101443 | SAMN05216593_12326 | UvrD/REP helicase N-terminal domain-containing protein. | ATP-dependent DNA helicase RecQ. | 0.912 |
| SHM54221.1 | recB | SAMN05216593_101443 | SAMN05216593_1204 | UvrD/REP helicase N-terminal domain-containing protein. | DNA helicase/exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombi [...] | 0.560 |
| SHM54221.1 | recD | SAMN05216593_101443 | SAMN05216593_1205 | UvrD/REP helicase N-terminal domain-containing protein. | DNA helicase/exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.801 |
| SHM63916.1 | SHN24902.1 | SAMN05216593_10271 | SAMN05216593_11766 | Rad3-related DNA helicase. | ATP-dependent DNA helicase RecQ. | 0.632 |
| SHM63916.1 | SHN28729.1 | SAMN05216593_10271 | SAMN05216593_12326 | Rad3-related DNA helicase. | ATP-dependent DNA helicase RecQ. | 0.632 |
| SHM63916.1 | recD | SAMN05216593_10271 | SAMN05216593_1205 | Rad3-related DNA helicase. | DNA helicase/exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.510 |
| SHM71160.1 | SHN24902.1 | SAMN05216593_102489 | SAMN05216593_11766 | Recombination protein MgsA. | ATP-dependent DNA helicase RecQ. | 0.904 |
| SHM71160.1 | SHN28729.1 | SAMN05216593_102489 | SAMN05216593_12326 | Recombination protein MgsA. | ATP-dependent DNA helicase RecQ. | 0.875 |
| SHM71160.1 | ruvA | SAMN05216593_102489 | SAMN05216593_103421 | Recombination protein MgsA. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.490 |
| SHM71160.1 | ruvB | SAMN05216593_102489 | SAMN05216593_103422 | Recombination protein MgsA. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.493 |
| SHN08911.1 | SHM54221.1 | SAMN05216593_107147 | SAMN05216593_101443 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | UvrD/REP helicase N-terminal domain-containing protein. | 0.674 |
| SHN08911.1 | SHN12489.1 | SAMN05216593_107147 | SAMN05216593_108199 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.654 |
| SHN08911.1 | SHN14416.1 | SAMN05216593_107147 | SAMN05216593_109189 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | UvrD/REP helicase N-terminal domain-containing protein. | 0.667 |
| SHN08911.1 | SHN20923.1 | SAMN05216593_107147 | SAMN05216593_11398 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | UvrD/REP helicase N-terminal domain-containing protein. | 0.667 |
| SHN08911.1 | SHN30274.1 | SAMN05216593_107147 | SAMN05216593_12633 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | ATP-dependent DNA helicase UvrD. | 0.738 |
| SHN08911.1 | priA | SAMN05216593_107147 | SAMN05216593_110143 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.611 |
page 1 of 7