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JBW_00056 JBW_00056 JBW_00521 JBW_00521 JBW_00804 JBW_00804 JBW_00805 JBW_00805 JBW_00806 JBW_00806 JBW_00811 JBW_00811 dsdA dsdA JBW_01008 JBW_01008 JBW_01177 JBW_01177 JBW_01250 JBW_01250 JBW_01307 JBW_01307 JBW_01399 JBW_01399 JBW_01831 JBW_01831 JBW_01832 JBW_01832 JBW_01860 JBW_01860 JBW_01939 JBW_01939 dapF dapF ahcY ahcY dapA dapA JBW_02324 JBW_02324 asd asd dapB dapB thrB thrB JBW_02376 JBW_02376 JBW_02720 JBW_02720 metAA metAA JBW_02928 JBW_02928 JBW_02930 JBW_02930 JBW_02931 JBW_02931 JBW_03081 JBW_03081 JBW_03147 JBW_03147 JBW_03456 JBW_03456 JBW_03468 JBW_03468 JBW_03477 JBW_03477 JBW_03519 JBW_03519 JBW_03544 JBW_03544 JBW_03605 JBW_03605 JBW_03654 JBW_03654 JBW_03909 JBW_03909 JBW_04001 JBW_04001 JBW_04230 JBW_04230 JBW_04450 JBW_04450 dapA-2 dapA-2 dapA-3 dapA-3 dapA-4 dapA-4 dapB-2 dapB-2 JBW_04760 JBW_04760 JBW_04761 JBW_04761 JBW_04762 JBW_04762
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
JBW_00056KEGG: CysE, serine acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; TIGRFAM: serine O-acetyltransferase. (222 aa)
JBW_00521Threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; TIGRFAM: threonine dehydratase; KEGG: threonine dehydratase. (403 aa)
JBW_00804Dehydratase, YjhG/YagF family; KEGG: dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; TIGRFAM: dehydratase, YjhG/YagF family; Belongs to the IlvD/Edd family. (661 aa)
JBW_00805PFAM: Gluconate transporter; TIGRFAM: gluconate transporter; KEGG: gntP, H+:gluconate symporter. (447 aa)
JBW_00806PFAM: dihydrodipicolinate synthetase; KEGG: pyruvate-dependent class I aldolase; Belongs to the DapA family. (298 aa)
JBW_00811KEGG: dapB, dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, C-terminal, dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; Belongs to the DapB family. (255 aa)
dsdAHAMAP : D-serine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: D-serine dehydratase; TIGRFAM: D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily. (451 aa)
JBW_01008PFAM: aminotransferase class I and II; KEGG: class I and II aminotransferase. (387 aa)
JBW_01177KEGG: cystathionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (372 aa)
JBW_01250PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal, Orn/DAP/Arg decarboxylase 2, C-terminal; KEGG: diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (422 aa)
JBW_01307Methylglyoxal reductase (NADPH-dependent); KEGG: 2,5-diketo-D-gluconic acid reductase; PFAM: NADP-dependent oxidoreductase domain. (280 aa)
JBW_01399TIGRFAM: threonine dehydratase; KEGG: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit, amino acid-binding ACT domain-containing protein. (411 aa)
JBW_01831KEGG: L-serine dehydratase, beta subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain, amino acid-binding ACT domain-containing protein. (220 aa)
JBW_01832KEGG: L-serine ammonia-lyase; PFAM: serine dehydratase alpha chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit. (296 aa)
JBW_01860Cystathionine beta-lyase; KEGG: aminotransferase class I and II; PFAM: aminotransferase class I and II. (399 aa)
JBW_01939KEGG: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; TIGRFAM: threonine synthase. (500 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (278 aa)
ahcYAdenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (413 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (293 aa)
JBW_02324Aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; KEGG: aspartate kinase; TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; Belongs to the aspartokinase family. (406 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (343 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (264 aa)
thrBHomoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. (302 aa)
JBW_02376KEGG: homoserine dehydrogenase; PFAM: homoserine dehydrogenase, homoserine dehydrogenase NAD-binding protein, amino acid-binding ACT domain-containing protein. (431 aa)
JBW_02720TIGRFAM: lysine-2,3-aminomutase, lysine 2,3-aminomutase YodO family protein; PFAM: Lysine-2,3-aminomutase, C-terminal domain, Radical SAM domain protein; KEGG: lysine 2,3-aminomutase YodO family protein. (426 aa)
metAAHomoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (317 aa)
JBW_02928KEGG: cysteine synthase A; TIGRFAM: cysteine synthase A, cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit. (312 aa)
JBW_02930KEGG: metC, cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (380 aa)
JBW_02931KEGG: metB, cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (378 aa)
JBW_03081PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: threonine aldolase. (344 aa)
JBW_03147KEGG: aspartate/tyrosine/aromatic aminotransferase; PFAM: aminotransferase class I and II. (426 aa)
JBW_03456KEGG: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal, Orn/DAP/Arg decarboxylase 2, C-terminal. (427 aa)
JBW_03468KEGG: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase-like domain. (120 aa)
JBW_03477TIGRFAM: aspartate kinase, monofunctional class, aspartate kinase; KEGG: putative aspartokinase; PFAM: aspartate/glutamate/uridylate kinase, amino acid-binding ACT domain-containing protein; Belongs to the aspartokinase family. (411 aa)
JBW_03519Threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit, amino acid-binding ACT domain-containing protein; KEGG: L-threonine ammonia-lyase; TIGRFAM: threonine dehydratase. (402 aa)
JBW_03544Cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: metC, cystathionine beta-lyase. (370 aa)
JBW_03605Serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; KEGG: serine O-acetyltransferase. (204 aa)
JBW_03654Cystathionine beta-lyase; PFAM: aminotransferase class I and II; KEGG: cystathionine beta-lyase. (388 aa)
JBW_03909Serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; TIGRFAM: serine O-acetyltransferase; KEGG: cysE, serine acetyltransferase. (225 aa)
JBW_04001Threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: putative threonine synthase. (330 aa)
JBW_04230O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: O-acetylhomoserine sulfhydrolase. (428 aa)
JBW_04450LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily. (410 aa)
dapA-2Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (304 aa)
dapA-3Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (304 aa)
dapA-4Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (292 aa)
dapB-2Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (272 aa)
JBW_04760KEGG: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (288 aa)
JBW_04761KEGG: Vitamin B12 dependent methionine synthase activation subunit; PFAM: Vitamin B12 dependent methionine synthase activation region. (226 aa)
JBW_04762SMART: Methionine synthase B12-binding module cap domain protein; PFAM: homocysteine S-methyltransferase, dihydropteroate synthase DHPS, Methionine synthase B12-binding module cap domain protein, cobalamin B12-binding domain protein; KEGG: metH, methionine synthase. (795 aa)
Your Current Organism:
Pelosinus fermentans
NCBI taxonomy Id: 1192197
Other names: P. fermentans JBW45, Pelosinus fermentans JBW45, Pelosinus fermentans str. JBW45, Pelosinus fermentans strain JBW45
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