STRINGSTRING
JBW_00694 JBW_00694 JBW_04699 JBW_04699 JBW_04444 JBW_04444 JBW_04407 JBW_04407 JBW_04363 JBW_04363 JBW_04238 JBW_04238 JBW_04228 JBW_04228 JBW_04031 JBW_04031 JBW_03770 JBW_03770 JBW_03593 JBW_03593 JBW_03516 JBW_03516 JBW_03506 JBW_03506 JBW_03505 JBW_03505 JBW_03472 JBW_03472 JBW_03407 JBW_03407 JBW_03375 JBW_03375 JBW_03237 JBW_03237 JBW_03167 JBW_03167 ppnP-2 ppnP-2 JBW_02966 JBW_02966 JBW_02946 JBW_02946 JBW_02609 JBW_02609 JBW_01417 JBW_01417 JBW_01217 JBW_01217 ppnP ppnP kduI kduI JBW_00827 JBW_00827 JBW_00737 JBW_00737 JBW_00669 JBW_00669 JBW_00651 JBW_00651 JBW_00310 JBW_00310 JBW_00269 JBW_00269 JBW_00252 JBW_00252 JBW_00155 JBW_00155 JBW_00133 JBW_00133 JBW_00104 JBW_00104
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
JBW_00694TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase; KEGG: algA, mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. (458 aa)
JBW_04699KEGG: hypothetical protein; PFAM: cyclic nucleotide-binding protein. (374 aa)
JBW_04444Transcriptional regulator, Crp/Fnr family; SMART: cyclic nucleotide-binding protein, regulatory protein Crp; PFAM: cyclic nucleotide-binding protein; KEGG: CRP/FNR family transcriptional regulator. (234 aa)
JBW_04407KEGG: putative mannose-6-phosphate isomerase, type I family protein; PFAM: mannose-6-phosphate isomerase type I. (321 aa)
JBW_04363Transcriptional regulator, XRE family with cupin 2 sensor; SMART: helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein, Cupin 2 conserved barrel domain protein; KEGG: helix-turn-helix domain-containing protein. (190 aa)
JBW_04238TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase; KEGG: algA, mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. (460 aa)
JBW_04228Transcriptional regulator, XRE family with cupin 2 sensor; PFAM: Cupin 2 conserved barrel domain protein; KEGG: transcriptional regulator; SMART: helix-turn-helix domain protein. (186 aa)
JBW_04031Transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerization, Helix-turn-helix, AraC domain-containing protein; KEGG: DNA-binding domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein. (261 aa)
JBW_03770PFAM: cyclic nucleotide-binding protein; KEGG: putative Crp family transcriptional regulator; SMART: regulatory protein Crp, cyclic nucleotide-binding protein. (229 aa)
JBW_03593KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein, AraC protein arabinose-binding/dimerization; SMART: Helix-turn-helix, AraC domain-containing protein. (265 aa)
JBW_03516KEGG: mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I. (306 aa)
JBW_03506SMART: Helix-turn-helix, AraC domain-containing protein; KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein, Cupin 2 conserved barrel domain protein. (288 aa)
JBW_03505PFAM: Cupin 2 conserved barrel domain protein; KEGG: cupin. (116 aa)
JBW_03472Transcriptional regulator, Crp/Fnr family; SMART: cyclic nucleotide-binding protein, regulatory protein Crp; PFAM: cyclic nucleotide-binding protein; KEGG: Crp/Fnr family transcriptional regulator. (235 aa)
JBW_03407KEGG: transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein. (285 aa)
JBW_03375PFAM: Cupin 2 conserved barrel domain protein; KEGG: hypothetical protein. (112 aa)
JBW_03237KEGG: cAMP-binding protein; PFAM: cyclic nucleotide-binding protein. (381 aa)
JBW_03167KEGG: cupin domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein. (104 aa)
ppnP-2UPF0345 protein yaiE; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (105 aa)
JBW_02966D-lyxose ketol-isomerase; KEGG: sugar ABC transporter, auxiliary component. (175 aa)
JBW_02946Transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain-containing protein; PFAM: Helix-turn-helix, AraC domain-containing protein, AraC protein arabinose-binding/dimerization; KEGG: transcriptional regulator. (307 aa)
JBW_02609PFAM: Cupin 2 conserved barrel domain protein. (138 aa)
JBW_01417PFAM: KduI/IolB isomerase; KEGG: myo-inositol catabolism protein IolB. (262 aa)
JBW_01217Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding protein; KEGG: cyclic nucleotide-binding protein. (238 aa)
ppnPUPF0345 protein yaiE; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (104 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (275 aa)
JBW_00827KEGG: mannose-6-phosphate isomerase. (315 aa)
JBW_00737KEGG: hypothetical protein; PFAM: WxcM-like domain-containing protein. (138 aa)
JBW_00669TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase; KEGG: algA, mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. (454 aa)
JBW_00651dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (177 aa)
JBW_00310KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein, AraC protein arabinose-binding/dimerization; SMART: Helix-turn-helix, AraC domain-containing protein. (304 aa)
JBW_00269Transcriptional regulator, XRE family with cupin 2 sensor; PFAM: helix-turn-helix domain protein, Cupin 2 conserved barrel domain protein; KEGG: DNA-binding protein; SMART: helix-turn-helix domain protein. (182 aa)
JBW_00252Transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain-containing protein; KEGG: helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC domain-containing protein, AraC protein arabinose-binding/dimerization. (286 aa)
JBW_00155KEGG: algA, mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II, Nucleotidyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family. (460 aa)
JBW_00133Transcriptional regulator, Crp/Fnr family; KEGG: Crp, cAMP-binding proteins; PFAM: cyclic nucleotide-binding protein; SMART: cyclic nucleotide-binding protein, regulatory protein Crp. (230 aa)
JBW_00104Transcriptional regulator, Crp/Fnr family; KEGG: cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding protein; SMART: regulatory protein Crp. (223 aa)
Your Current Organism:
Pelosinus fermentans
NCBI taxonomy Id: 1192197
Other names: P. fermentans JBW45, Pelosinus fermentans JBW45, Pelosinus fermentans str. JBW45, Pelosinus fermentans strain JBW45
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