22 items (Leptospira borgpetersenii Pomona) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EMO63173.1	PF13372 domain protein. (610 aa)
	EMO61728.1	Outer membrane protein. (426 aa)
	EMO63979.1	Transporter, Ompp1/FadL/TodX family. (483 aa)
	EMO61273.1	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (59 aa)
	EMO61282.1	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (199 aa)
	EMO61293.1	OmpA family protein. (661 aa)
	EMO63614.1	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (131 aa)
	EMO63588.1	OmpA family protein. (395 aa)
	EMO61167.1	PF13372 domain protein. (647 aa)
	EMO65198.1	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (658 aa)
	EMO63838.1	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (63 aa)
	EMO63825.1	Transporter, Ompp1/FadL/TodX domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (187 aa)
	EMO63280.1	TonB-dependent receptor. (777 aa)
	EMO61913.1	Hypothetical protein. (311 aa)
	EMO61058.1	Hypothetical protein. (497 aa)
	EMO64712.1	PF13372 domain protein. (600 aa)
	EMO60391.1	OmpA family protein. (195 aa)
	EMO61462.1	OmpA family protein. (378 aa)
	EMO65259.1	TonB-dependent receptor. (733 aa)
	EMO62155.1	Hypothetical protein. (554 aa)
	EMO60602.1	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (269 aa)
	EMO60574.1	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (326 aa)

Your Current Organism:

Leptospira borgpetersenii Pomona

NCBI taxonomy Id: 1192866
Other names: L. borgpetersenii serovar Pomona str. 200901868, Leptospira borgpetersenii serovar Pomona str. 200901868

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMO60391.1	EMO61293.1	LEP1GSC133_3182	LEP1GSC133_1315	OmpA family protein.	OmpA family protein.	0.837
EMO60391.1	EMO61462.1	LEP1GSC133_3182	LEP1GSC133_3365	OmpA family protein.	OmpA family protein.	0.551
EMO60391.1	EMO63588.1	LEP1GSC133_3182	LEP1GSC133_1406	OmpA family protein.	OmpA family protein.	0.715
EMO60391.1	EMO65198.1	LEP1GSC133_3182	LEP1GSC133_1594	OmpA family protein.	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.490
EMO60574.1	EMO60602.1	LEP1GSC133_5095	LEP1GSC133_5094	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.915
EMO60574.1	EMO61293.1	LEP1GSC133_5095	LEP1GSC133_1315	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein.	0.670
EMO60574.1	EMO63588.1	LEP1GSC133_5095	LEP1GSC133_1406	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein.	0.670
EMO60602.1	EMO60574.1	LEP1GSC133_5094	LEP1GSC133_5095	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.915
EMO60602.1	EMO61167.1	LEP1GSC133_5094	LEP1GSC133_1468	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	PF13372 domain protein.	0.417
EMO60602.1	EMO61293.1	LEP1GSC133_5094	LEP1GSC133_1315	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein.	0.818
EMO60602.1	EMO61462.1	LEP1GSC133_5094	LEP1GSC133_3365	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein.	0.536
EMO60602.1	EMO61913.1	LEP1GSC133_5094	LEP1GSC133_2476	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.536
EMO60602.1	EMO63173.1	LEP1GSC133_5094	LEP1GSC133_0346	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	PF13372 domain protein.	0.413
EMO60602.1	EMO63588.1	LEP1GSC133_5094	LEP1GSC133_1406	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein.	0.825
EMO60602.1	EMO65198.1	LEP1GSC133_5094	LEP1GSC133_1594	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	OmpA family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.616
EMO61058.1	EMO61167.1	LEP1GSC133_2647	LEP1GSC133_1468	Hypothetical protein.	PF13372 domain protein.	0.476
EMO61058.1	EMO61293.1	LEP1GSC133_2647	LEP1GSC133_1315	Hypothetical protein.	OmpA family protein.	0.909
EMO61058.1	EMO61913.1	LEP1GSC133_2647	LEP1GSC133_2476	Hypothetical protein.	Hypothetical protein.	0.442
EMO61058.1	EMO63173.1	LEP1GSC133_2647	LEP1GSC133_0346	Hypothetical protein.	PF13372 domain protein.	0.476
EMO61058.1	EMO63280.1	LEP1GSC133_2647	LEP1GSC133_2161	Hypothetical protein.	TonB-dependent receptor.	0.720