STRINGSTRING
rpe rpe EMO65167.1 EMO65167.1 EMO62053.1 EMO62053.1 EMO61940.1 EMO61940.1 rnc rnc EMO62712.1 EMO62712.1 EMO62884.1 EMO62884.1 EMO62880.1 EMO62880.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (214 aa)
EMO65167.1Putative glyoxal reductase. (274 aa)
EMO62053.1Nucleotide sugar dehydrogenase. (436 aa)
EMO61940.1F5/8 type C domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (234 aa)
rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (247 aa)
EMO62712.1UTP--glucose-1-phosphate uridylyltransferase. (472 aa)
EMO62884.1Tetratricopeptide repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (2195 aa)
EMO62880.1WD40-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (392 aa)
Your Current Organism:
Leptospira borgpetersenii Pomona
NCBI taxonomy Id: 1192866
Other names: L. borgpetersenii serovar Pomona str. 200901868, Leptospira borgpetersenii serovar Pomona str. 200901868
Server load: low (16%) [HD]