(23 nodes) Mixed, incl. DNA strand exchange activity, and DDE transposase sub-family network (Bacillus mesonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHR53_17760	Unannotated protein. (264 aa)
	CHR53_17765	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (343 aa)
	CHR53_17770	Unannotated protein. (335 aa)
	GCA_001636315_00389	Unannotated protein. (42 aa)
	CHR53_17785	Unannotated protein. (31 aa)
	GCA_001636315_00794	Unannotated protein. (522 aa)
	GCA_001636315_00800	Unannotated protein. (186 aa)
	GCA_001636315_00801	Unannotated protein. (174 aa)
	GCA_001636315_00802	Unannotated protein. (151 aa)
	GCA_001636315_00803	Unannotated protein. (83 aa)
	GCA_001636315_00804	Unannotated protein. (194 aa)
	GCA_001636315_00954	Unannotated protein. (187 aa)
	CHR53_24985	Unannotated protein. (267 aa)
	CHR53_24990	Unannotated protein. (439 aa)
	CHR53_24995	Unannotated protein. (328 aa)
	CHR53_25000	Unannotated protein. (331 aa)
	CHR53_01370	Unannotated protein; Required for the transposition of the insertion element. (388 aa)
	CHR53_00950	Unannotated protein. (191 aa)
	CHR53_00955	Unannotated protein. (988 aa)
	CHR53_04215	Unannotated protein; Belongs to the UPF0178 family. (148 aa)
	GCA_001636315_03367	Unannotated protein. (388 aa)
	CHR53_06255	Unannotated protein. (162 aa)
	CHR53_15300	Unannotated protein. (235 aa)

Your Current Organism:

Bacillus mesonae

NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHR53_00950	CHR53_00955	GCA_001636315_02740	GCA_001636315_02741	Unannotated protein.	Unannotated protein.	0.882
CHR53_00950	CHR53_01370	GCA_001636315_02740	GCA_001636315_02416	Unannotated protein.	Unannotated protein; Required for the transposition of the insertion element.	0.485
CHR53_00950	GCA_001636315_00794	GCA_001636315_02740	GCA_001636315_00794	Unannotated protein.	Unannotated protein.	0.542
CHR53_00950	GCA_001636315_03367	GCA_001636315_02740	GCA_001636315_03367	Unannotated protein.	Unannotated protein.	0.484
CHR53_00955	CHR53_00950	GCA_001636315_02741	GCA_001636315_02740	Unannotated protein.	Unannotated protein.	0.882
CHR53_00955	GCA_001636315_00800	GCA_001636315_02741	GCA_001636315_00800	Unannotated protein.	Unannotated protein.	0.725
CHR53_00955	GCA_001636315_00954	GCA_001636315_02741	GCA_001636315_00954	Unannotated protein.	Unannotated protein.	0.777
CHR53_01370	CHR53_00950	GCA_001636315_02416	GCA_001636315_02740	Unannotated protein; Required for the transposition of the insertion element.	Unannotated protein.	0.485
CHR53_01370	GCA_001636315_00800	GCA_001636315_02416	GCA_001636315_00800	Unannotated protein; Required for the transposition of the insertion element.	Unannotated protein.	0.447
CHR53_01370	GCA_001636315_00954	GCA_001636315_02416	GCA_001636315_00954	Unannotated protein; Required for the transposition of the insertion element.	Unannotated protein.	0.454
CHR53_17760	CHR53_17765	GCA_001636315_00386	GCA_001636315_00387	Unannotated protein.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.983
CHR53_17760	CHR53_17770	GCA_001636315_00386	GCA_001636315_00388	Unannotated protein.	Unannotated protein.	0.913
CHR53_17760	CHR53_25000	GCA_001636315_00386	GCA_001636315_01896	Unannotated protein.	Unannotated protein.	0.817
CHR53_17765	CHR53_17760	GCA_001636315_00387	GCA_001636315_00386	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.983
CHR53_17765	CHR53_17770	GCA_001636315_00387	GCA_001636315_00388	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.984
CHR53_17765	CHR53_25000	GCA_001636315_00387	GCA_001636315_01896	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.982
CHR53_17770	CHR53_17760	GCA_001636315_00388	GCA_001636315_00386	Unannotated protein.	Unannotated protein.	0.913
CHR53_17770	CHR53_17765	GCA_001636315_00388	GCA_001636315_00387	Unannotated protein.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.984
CHR53_17770	GCA_001636315_00389	GCA_001636315_00388	GCA_001636315_00389	Unannotated protein.	Unannotated protein.	0.416
CHR53_24985	CHR53_24990	GCA_001636315_01893	GCA_001636315_01894	Unannotated protein.	Unannotated protein.	0.469