STRINGSTRING
CHR53_16050 CHR53_16050 purU purU lpdA lpdA glyA glyA mdh mdh CHR53_16745 CHR53_16745 CHR53_16755 CHR53_16755 mdh-2 mdh-2 CHR53_16865 CHR53_16865 CHR53_16875 CHR53_16875 CHR53_17175 CHR53_17175 CHR53_17195 CHR53_17195 CHR53_17285 CHR53_17285 CHR53_18000 CHR53_18000 odhA odhA CHR53_18340 CHR53_18340 thyA thyA fhs fhs CHR53_18690 CHR53_18690 CHR53_18990 CHR53_18990 dinB dinB CHR53_19345 CHR53_19345 CHR53_19350 CHR53_19350 mce mce CHR53_19360 CHR53_19360 CHR53_19385 CHR53_19385 CHR53_19390 CHR53_19390 CHR53_19395 CHR53_19395 CHR53_19400 CHR53_19400 CHR53_19405 CHR53_19405 CHR53_19410 CHR53_19410 CHR53_19415 CHR53_19415 lpdA-2 lpdA-2 buk buk CHR53_19430 CHR53_19430 CHR53_19435 CHR53_19435 folD folD accC accC accB accB lipM lipM gcvPB gcvPB gcvPA gcvPA gcvT gcvT ldh ldh CHR53_20470 CHR53_20470 CHR53_20475 CHR53_20475 pdhA pdhA CHR53_20830 CHR53_20830 murI murI CHR53_20980 CHR53_20980 CHR53_20985 CHR53_20985 CHR53_20990 CHR53_20990 mdh-3 mdh-3 CHR53_21230 CHR53_21230 CHR53_21235 CHR53_21235 accA accA accD accD CHR53_21270 CHR53_21270 ackA ackA CHR53_21395 CHR53_21395 CHR53_21450 CHR53_21450 pckA pckA CHR53_22155 CHR53_22155 CHR53_22295 CHR53_22295 lipA lipA gcvH gcvH ilvB ilvB CHR53_24240 CHR53_24240 CHR53_24245 CHR53_24245 CHR53_24465 CHR53_24465 CHR53_25220 CHR53_25220 glsA glsA CHR53_25945 CHR53_25945 CHR53_26135 CHR53_26135 glyA-2 glyA-2 icmF icmF lipL lipL pta pta CHR53_27625 CHR53_27625 mqo mqo glmS glmS CHR53_01280 CHR53_01280 CHR53_02145 CHR53_02145 CHR53_02155 CHR53_02155 CHR53_02275 CHR53_02275 CHR53_03170 CHR53_03170 CHR53_03675 CHR53_03675 CHR53_03680 CHR53_03680 CHR53_03730 CHR53_03730 CHR53_03735 CHR53_03735 CHR53_03875 CHR53_03875 CHR53_04060 CHR53_04060 CHR53_04065 CHR53_04065 CHR53_04725 CHR53_04725 CHR53_04920 CHR53_04920 CHR53_04965 CHR53_04965 CHR53_05560 CHR53_05560 leuD leuD leuC leuC leuB leuB leuA leuA ilvC ilvC CHR53_05755 CHR53_05755 ilvB-2 ilvB-2 ilvD ilvD CHR53_06200 CHR53_06200 CHR53_06310 CHR53_06310 fumC fumC CHR53_07955 CHR53_07955 CHR53_08510 CHR53_08510 CHR53_08630 CHR53_08630 CHR53_08635 CHR53_08635 pdhA-2 pdhA-2 CHR53_08895 CHR53_08895 CHR53_08900 CHR53_08900 lpdA-3 lpdA-3 pyc pyc CHR53_09160 CHR53_09160 CHR53_09165 CHR53_09165 CHR53_09170 CHR53_09170 sucC sucC sucD sucD CHR53_09920 CHR53_09920 CHR53_09925 CHR53_09925 glnA glnA CHR53_11750 CHR53_11750 glsA-2 glsA-2 CHR53_12330 CHR53_12330 ilvA ilvA CHR53_12555 CHR53_12555 CHR53_12745 CHR53_12745 CHR53_12750 CHR53_12750 acnA acnA CHR53_13590 CHR53_13590 CHR53_13650 CHR53_13650 CHR53_13910 CHR53_13910 lpdA-4 lpdA-4 CHR53_13930 CHR53_13930 CHR53_13935 CHR53_13935 CHR53_13940 CHR53_13940 sucD-2 sucD-2 CHR53_14035 CHR53_14035 CHR53_14260 CHR53_14260 CHR53_15130 CHR53_15130 CHR53_15815 CHR53_15815 CHR53_15850 CHR53_15850
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CHR53_16050Unannotated protein. (729 aa)
purUUnannotated protein; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (299 aa)
lpdAUnannotated protein. (466 aa)
glyAUnannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (416 aa)
mdhUnannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (315 aa)
CHR53_16745Unannotated protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (217 aa)
CHR53_16755Unannotated protein. (508 aa)
mdh-2Unannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (316 aa)
CHR53_16865Unannotated protein. (261 aa)
CHR53_16875Unannotated protein. (491 aa)
CHR53_17175Unannotated protein. (672 aa)
CHR53_17195Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (78 aa)
CHR53_17285Unannotated protein. (222 aa)
CHR53_18000Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (422 aa)
odhAUnannotated protein; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). (941 aa)
CHR53_18340Unannotated protein; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. (163 aa)
thyAUnannotated protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. (264 aa)
fhsUnannotated protein; Belongs to the formate--tetrahydrofolate ligase family. (562 aa)
CHR53_18690Unannotated protein. (396 aa)
CHR53_18990Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (425 aa)
dinBUnannotated protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (425 aa)
CHR53_19345Unannotated protein. (373 aa)
CHR53_19350Unannotated protein. (515 aa)
mceUnannotated protein. (137 aa)
CHR53_19360Unannotated protein. (170 aa)
CHR53_19385Unannotated protein. (439 aa)
CHR53_19390Unannotated protein. (371 aa)
CHR53_19395Unannotated protein. (732 aa)
CHR53_19400Unannotated protein. (611 aa)
CHR53_19405Unannotated protein. (436 aa)
CHR53_19410Unannotated protein. (327 aa)
CHR53_19415Unannotated protein. (330 aa)
lpdA-2Unannotated protein. (473 aa)
bukUnannotated protein; Belongs to the acetokinase family. (367 aa)
CHR53_19430Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (367 aa)
CHR53_19435Unannotated protein. (306 aa)
folDUnannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (284 aa)
accCUnannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa)
accBUnannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (167 aa)
lipMUnannotated protein; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domain of GcvH, an intermediate carrier during protein lipoylation. (278 aa)
gcvPBUnannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (485 aa)
gcvPAUnannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (454 aa)
gcvTUnannotated protein; The glycine cleavage system catalyzes the degradation of glycine. (366 aa)
ldhUnannotated protein; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (318 aa)
CHR53_20470Unannotated protein. (429 aa)
CHR53_20475Unannotated protein. (338 aa)
pdhAUnannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (366 aa)
CHR53_20830Unannotated protein; Belongs to the folylpolyglutamate synthase family. (440 aa)
murIUnannotated protein; Provides the (R)-glutamate required for cell wall biosynthesis. (266 aa)
CHR53_20980Unannotated protein. (253 aa)
CHR53_20985Unannotated protein. (583 aa)
CHR53_20990Unannotated protein. (202 aa)
mdh-3Unannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (312 aa)
CHR53_21230Unannotated protein. (422 aa)
CHR53_21235Unannotated protein; Belongs to the citrate synthase family. (373 aa)
accAUnannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (325 aa)
accDUnannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (292 aa)
CHR53_21270Unannotated protein. (412 aa)
ackAUnannotated protein; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa)
CHR53_21395Unannotated protein. (527 aa)
CHR53_21450Unannotated protein. (573 aa)
pckAUnannotated protein; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (528 aa)
CHR53_22155Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (429 aa)
CHR53_22295Unannotated protein. (329 aa)
lipAUnannotated protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (307 aa)
gcvHUnannotated protein; Is also involved in protein lipoylation via its role as an octanoyl/lipoyl carrier protein intermediate; Belongs to the GcvH family. (127 aa)
ilvBUnannotated protein. (567 aa)
CHR53_24240Unannotated protein; Belongs to the glutamate synthase family. (470 aa)
CHR53_24245Unannotated protein; Belongs to the glutamate synthase family. (473 aa)
CHR53_24465Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)
CHR53_25220Unannotated protein. (316 aa)
glsAUnannotated protein; Belongs to the glutaminase family. (327 aa)
CHR53_25945Unannotated protein. (265 aa)
CHR53_26135Unannotated protein; Belongs to the TPP enzyme family. (544 aa)
glyA-2Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (413 aa)
icmFUnannotated protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. (1083 aa)
lipLUnannotated protein; Catalyzes the amidotransfer (transamidation) of the octanoyl moiety from octanoyl-GcvH to the lipoyl domain of the E2 subunit of lipoate-dependent enzymes; Belongs to the octanoyltransferase LipL family. (284 aa)
ptaUnannotated protein. (323 aa)
CHR53_27625Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (460 aa)
mqoUnannotated protein. (511 aa)
glmSUnannotated protein; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (600 aa)
CHR53_01280Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (430 aa)
CHR53_02145Unannotated protein; Belongs to the TPP enzyme family. (557 aa)
CHR53_02155Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (391 aa)
CHR53_02275Unannotated protein. (362 aa)
CHR53_03170Unannotated protein. (504 aa)
CHR53_03675Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (462 aa)
CHR53_03680Unannotated protein. (521 aa)
CHR53_03730Unannotated protein. (524 aa)
CHR53_03735Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (462 aa)
CHR53_03875Unannotated protein; Belongs to the TPP enzyme family. (547 aa)
CHR53_04060Unannotated protein. (360 aa)
CHR53_04065Unannotated protein. (393 aa)
CHR53_04725Unannotated protein; Belongs to the LDH/MDH superfamily. (324 aa)
CHR53_04920Unannotated protein; Belongs to the glutamate synthase family. (531 aa)
CHR53_04965Unannotated protein. (458 aa)
CHR53_05560Unannotated protein. (123 aa)
leuDUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (194 aa)
leuCUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (472 aa)
leuBUnannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (368 aa)
leuAUnannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (513 aa)
ilvCUnannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (343 aa)
CHR53_05755Unannotated protein. (173 aa)
ilvB-2Unannotated protein. (575 aa)
ilvDUnannotated protein; Belongs to the IlvD/Edd family. (555 aa)
CHR53_06200Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (516 aa)
CHR53_06310Unannotated protein. (372 aa)
fumCUnannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (459 aa)
CHR53_07955Unannotated protein. (329 aa)
CHR53_08510Unannotated protein. (389 aa)
CHR53_08630Unannotated protein. (337 aa)
CHR53_08635Unannotated protein. (764 aa)
pdhA-2Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (371 aa)
CHR53_08895Unannotated protein. (325 aa)
CHR53_08900Unannotated protein. (440 aa)
lpdA-3Unannotated protein. (471 aa)
pycUnannotated protein; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1147 aa)
CHR53_09160Unannotated protein. (445 aa)
CHR53_09165Unannotated protein. (70 aa)
CHR53_09170Unannotated protein. (513 aa)
sucCUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (386 aa)
sucDUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (300 aa)
CHR53_09920Unannotated protein. (578 aa)
CHR53_09925Unannotated protein. (288 aa)
glnAUnannotated protein. (444 aa)
CHR53_11750Unannotated protein. (340 aa)
glsA-2Unannotated protein; Belongs to the glutaminase family. (309 aa)
CHR53_12330Unannotated protein; Belongs to the IlvD/Edd family. (735 aa)
ilvAUnannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (421 aa)
CHR53_12555Unannotated protein. (205 aa)
CHR53_12745Unannotated protein. (396 aa)
CHR53_12750Unannotated protein. (320 aa)
acnAUnannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (901 aa)
CHR53_13590Unannotated protein; Belongs to the TPP enzyme family. (528 aa)
CHR53_13650Unannotated protein. (765 aa)
CHR53_13910Unannotated protein. (1494 aa)
lpdA-4Unannotated protein. (460 aa)
CHR53_13930Unannotated protein. (438 aa)
CHR53_13935Unannotated protein. (326 aa)
CHR53_13940Unannotated protein. (329 aa)
sucD-2Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (296 aa)
CHR53_14035Unannotated protein. (374 aa)
CHR53_14260Unannotated protein; Belongs to the TPP enzyme family. (553 aa)
CHR53_15130Unannotated protein. (117 aa)
CHR53_15815Unannotated protein. (499 aa)
CHR53_15850Unannotated protein. (379 aa)
Your Current Organism:
Bacillus mesonae
NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985
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