19 items (Bacillus mesonae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHR53_22290	Unannotated protein. (194 aa)
	CHR53_22305	Unannotated protein. (310 aa)
	CHR53_22310	Unannotated protein. (285 aa)
	CHR53_22315	Unannotated protein. (376 aa)
	mviN	Unannotated protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (512 aa)
	CHR53_22325	Unannotated protein. (361 aa)
	CHR53_22330	Unannotated protein. (428 aa)
	CHR53_22335	Unannotated protein. (229 aa)
	CHR53_22340	Unannotated protein. (245 aa)
	CHR53_22345	Unannotated protein. (115 aa)
	CHR53_22350	Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family. (386 aa)
	CHR53_22355	Unannotated protein. (608 aa)
	CHR53_03895	Unannotated protein. (219 aa)
	CHR53_03900	Unannotated protein. (487 aa)
	CHR53_03905	Unannotated protein. (395 aa)
	CHR53_03915	Unannotated protein. (432 aa)
	CHR53_03920	Unannotated protein. (228 aa)
	CHR53_03925	Unannotated protein. (252 aa)
	CHR53_03930	Unannotated protein. (385 aa)

Your Current Organism:

Bacillus mesonae

NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHR53_03895	CHR53_03900	GCA_001636315_03296	GCA_001636315_03297	Unannotated protein.	Unannotated protein.	0.866
CHR53_03895	CHR53_03905	GCA_001636315_03296	GCA_001636315_03298	Unannotated protein.	Unannotated protein.	0.836
CHR53_03895	CHR53_03915	GCA_001636315_03296	GCA_001636315_03300	Unannotated protein.	Unannotated protein.	0.687
CHR53_03895	CHR53_03920	GCA_001636315_03296	GCA_001636315_03301	Unannotated protein.	Unannotated protein.	0.518
CHR53_03895	CHR53_03925	GCA_001636315_03296	GCA_001636315_03302	Unannotated protein.	Unannotated protein.	0.764
CHR53_03895	CHR53_03930	GCA_001636315_03296	GCA_001636315_03303	Unannotated protein.	Unannotated protein.	0.575
CHR53_03895	CHR53_22310	GCA_001636315_03296	GCA_001636315_01356	Unannotated protein.	Unannotated protein.	0.553
CHR53_03895	CHR53_22315	GCA_001636315_03296	GCA_001636315_01357	Unannotated protein.	Unannotated protein.	0.578
CHR53_03895	CHR53_22330	GCA_001636315_03296	GCA_001636315_01360	Unannotated protein.	Unannotated protein.	0.422
CHR53_03895	CHR53_22335	GCA_001636315_03296	GCA_001636315_01361	Unannotated protein.	Unannotated protein.	0.762
CHR53_03895	CHR53_22340	GCA_001636315_03296	GCA_001636315_01362	Unannotated protein.	Unannotated protein.	0.668
CHR53_03895	CHR53_22350	GCA_001636315_03296	GCA_001636315_01364	Unannotated protein.	Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family.	0.705
CHR53_03895	CHR53_22355	GCA_001636315_03296	GCA_001636315_01365	Unannotated protein.	Unannotated protein.	0.507
CHR53_03900	CHR53_03895	GCA_001636315_03297	GCA_001636315_03296	Unannotated protein.	Unannotated protein.	0.866
CHR53_03900	CHR53_03905	GCA_001636315_03297	GCA_001636315_03298	Unannotated protein.	Unannotated protein.	0.967
CHR53_03900	CHR53_03915	GCA_001636315_03297	GCA_001636315_03300	Unannotated protein.	Unannotated protein.	0.804
CHR53_03900	CHR53_03920	GCA_001636315_03297	GCA_001636315_03301	Unannotated protein.	Unannotated protein.	0.842
CHR53_03900	CHR53_03925	GCA_001636315_03297	GCA_001636315_03302	Unannotated protein.	Unannotated protein.	0.877
CHR53_03900	CHR53_03930	GCA_001636315_03297	GCA_001636315_03303	Unannotated protein.	Unannotated protein.	0.899
CHR53_03900	CHR53_22290	GCA_001636315_03297	GCA_001636315_01352	Unannotated protein.	Unannotated protein.	0.533