(13 nodes) Oxoprolinase family, and Cytosine deaminase activity network (Bacillus mesonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHR53_27660	Unannotated protein. (424 aa)
	CHR53_27665	Unannotated protein. (420 aa)
	CHR53_00990	Unannotated protein. (578 aa)
	CHR53_00995	Unannotated protein. (680 aa)
	CHR53_04655	Unannotated protein. (676 aa)
	CHR53_04660	Unannotated protein. (658 aa)
	CHR53_13040	Unannotated protein; Belongs to the purine-cytosine permease (2.A.39) family. (487 aa)
	CHR53_13045	Unannotated protein. (417 aa)
	CHR53_13050	Unannotated protein. (419 aa)
	CHR53_13055	Unannotated protein. (447 aa)
	CHR53_13060	Unannotated protein. (276 aa)
	CHR53_14290	Unannotated protein. (582 aa)
	CHR53_14295	Unannotated protein. (680 aa)

Your Current Organism:

Bacillus mesonae

NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHR53_00990	CHR53_00995	GCA_001636315_02748	GCA_001636315_02749	Unannotated protein.	Unannotated protein.	0.999
CHR53_00990	CHR53_04655	GCA_001636315_02748	GCA_001636315_03456	Unannotated protein.	Unannotated protein.	0.999
CHR53_00990	CHR53_04660	GCA_001636315_02748	GCA_001636315_03457	Unannotated protein.	Unannotated protein.	0.922
CHR53_00990	CHR53_13045	GCA_001636315_02748	GCA_001636315_05048	Unannotated protein.	Unannotated protein.	0.900
CHR53_00990	CHR53_13050	GCA_001636315_02748	GCA_001636315_05049	Unannotated protein.	Unannotated protein.	0.900
CHR53_00990	CHR53_14290	GCA_001636315_02748	GCA_001636315_05299	Unannotated protein.	Unannotated protein.	0.901
CHR53_00990	CHR53_14295	GCA_001636315_02748	GCA_001636315_05300	Unannotated protein.	Unannotated protein.	0.999
CHR53_00990	CHR53_27660	GCA_001636315_02748	GCA_001636315_02451	Unannotated protein.	Unannotated protein.	0.900
CHR53_00995	CHR53_00990	GCA_001636315_02749	GCA_001636315_02748	Unannotated protein.	Unannotated protein.	0.999
CHR53_00995	CHR53_04655	GCA_001636315_02749	GCA_001636315_03456	Unannotated protein.	Unannotated protein.	0.909
CHR53_00995	CHR53_04660	GCA_001636315_02749	GCA_001636315_03457	Unannotated protein.	Unannotated protein.	0.999
CHR53_00995	CHR53_13045	GCA_001636315_02749	GCA_001636315_05048	Unannotated protein.	Unannotated protein.	0.900
CHR53_00995	CHR53_13050	GCA_001636315_02749	GCA_001636315_05049	Unannotated protein.	Unannotated protein.	0.900
CHR53_00995	CHR53_14290	GCA_001636315_02749	GCA_001636315_05299	Unannotated protein.	Unannotated protein.	0.999
CHR53_00995	CHR53_14295	GCA_001636315_02749	GCA_001636315_05300	Unannotated protein.	Unannotated protein.	0.901
CHR53_00995	CHR53_27660	GCA_001636315_02749	GCA_001636315_02451	Unannotated protein.	Unannotated protein.	0.900
CHR53_04655	CHR53_00990	GCA_001636315_03456	GCA_001636315_02748	Unannotated protein.	Unannotated protein.	0.999
CHR53_04655	CHR53_00995	GCA_001636315_03456	GCA_001636315_02749	Unannotated protein.	Unannotated protein.	0.909
CHR53_04655	CHR53_04660	GCA_001636315_03456	GCA_001636315_03457	Unannotated protein.	Unannotated protein.	0.999
CHR53_04655	CHR53_13045	GCA_001636315_03456	GCA_001636315_05048	Unannotated protein.	Unannotated protein.	0.900