STRINGSTRING
GCA_001636315_00278 GCA_001636315_00278 xth xth CHR53_17725 CHR53_17725 CHR53_17790 CHR53_17790 ligD ligD CHR53_18355 CHR53_18355 CHR53_18360 CHR53_18360 CHR53_18400 CHR53_18400 CHR53_18480 CHR53_18480 CHR53_18505 CHR53_18505 recU recU dinG dinG rnz rnz xseB xseB xseA xseA nfo nfo ybeY ybeY CHR53_20420 CHR53_20420 recJ recJ spoVB spoVB CHR53_20700 CHR53_20700 rph rph uvrC uvrC mutS2 mutS2 rnhC rnhC polA polA CHR53_21275 CHR53_21275 CHR53_21620 CHR53_21620 CHR53_22570 CHR53_22570 CHR53_22660 CHR53_22660 CHR53_22790 CHR53_22790 rnr rnr uvrA uvrA uvrB uvrB CHR53_25860 CHR53_25860 rnpA rnpA CHR53_00010 CHR53_00010 CHR53_00205 CHR53_00205 CHR53_00245 CHR53_00245 rnmV rnmV CHR53_00335 CHR53_00335 CHR53_00555 CHR53_00555 mrnC mrnC CHR53_01625 CHR53_01625 CHR53_02115 CHR53_02115 CHR53_02185 CHR53_02185 uvsE uvsE CHR53_02760 CHR53_02760 CHR53_02860 CHR53_02860 CHR53_02915 CHR53_02915 CHR53_03045 CHR53_03045 rnj rnj CHR53_03920 CHR53_03920 CHR53_04415 CHR53_04415 GCA_001636315_03402 GCA_001636315_03402 GCA_001636315_03412 GCA_001636315_03412 CHR53_05235 CHR53_05235 CHR53_05510 CHR53_05510 CHR53_06090 CHR53_06090 CHR53_06170 CHR53_06170 CHR53_07845 CHR53_07845 yhaM yhaM CHR53_07950 CHR53_07950 addB addB addA addA rnj-2 rnj-2 CHR53_09410 CHR53_09410 rnc rnc rnhB rnhB polC polC rnj-3 rnj-3 rny rny rnz-2 rnz-2 CHR53_10075 CHR53_10075 CHR53_10100 CHR53_10100 sbcD sbcD CHR53_10765 CHR53_10765 CHR53_10885 CHR53_10885 GCA_001636315_05446 GCA_001636315_05446 GCA_001636315_05546 GCA_001636315_05546 GCA_001636315_05547 GCA_001636315_05547 CHR53_15750 CHR53_15750
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_001636315_00278Unannotated protein. (313 aa)
xthUnannotated protein. (250 aa)
CHR53_17725Unannotated protein. (414 aa)
CHR53_17790Unannotated protein. (297 aa)
ligDUnannotated protein. (614 aa)
CHR53_18355Unannotated protein. (192 aa)
CHR53_18360Unannotated protein. (205 aa)
CHR53_18400Unannotated protein. (193 aa)
CHR53_18480Unannotated protein. (218 aa)
CHR53_18505Unannotated protein. (297 aa)
recUUnannotated protein; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. (203 aa)
dinGUnannotated protein; 3'-5' exonuclease. (942 aa)
rnzUnannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (307 aa)
xseBUnannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (77 aa)
xseAUnannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (452 aa)
nfoUnannotated protein; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (297 aa)
ybeYUnannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (156 aa)
CHR53_20420Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (138 aa)
recJUnannotated protein. (787 aa)
spoVBUnannotated protein. (517 aa)
CHR53_20700Unannotated protein. (483 aa)
rphUnannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (271 aa)
uvrCUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (591 aa)
mutS2Unannotated protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (786 aa)
rnhCUnannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (328 aa)
polAUnannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (878 aa)
CHR53_21275Unannotated protein. (1121 aa)
CHR53_21620Unannotated protein. (543 aa)
CHR53_22570Unannotated protein. (264 aa)
CHR53_22660Unannotated protein. (145 aa)
CHR53_22790Unannotated protein. (118 aa)
rnrUnannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (779 aa)
uvrAUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (957 aa)
uvrBUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the [...] (659 aa)
CHR53_25860Unannotated protein. (156 aa)
rnpAUnannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (118 aa)
CHR53_00010Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] (378 aa)
CHR53_00205Unannotated protein. (335 aa)
CHR53_00245Unannotated protein. (255 aa)
rnmVUnannotated protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (187 aa)
CHR53_00335Unannotated protein. (543 aa)
CHR53_00555Unannotated protein. (362 aa)
mrnCUnannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (141 aa)
CHR53_01625Unannotated protein; Toxic component of a type II toxin-antitoxin (TA) system. (116 aa)
CHR53_02115Unannotated protein. (584 aa)
CHR53_02185Unannotated protein. (321 aa)
uvsEUnannotated protein. (317 aa)
CHR53_02760Unannotated protein. (759 aa)
CHR53_02860Unannotated protein. (1056 aa)
CHR53_02915Unannotated protein. (281 aa)
CHR53_03045Unannotated protein. (354 aa)
rnjUnannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. (557 aa)
CHR53_03920Unannotated protein. (228 aa)
CHR53_04415Unannotated protein. (118 aa)
GCA_001636315_03402Unannotated protein. (415 aa)
GCA_001636315_03412Unannotated protein. (139 aa)
CHR53_05235Unannotated protein. (248 aa)
CHR53_05510Unannotated protein. (202 aa)
CHR53_06090Unannotated protein. (443 aa)
CHR53_06170Unannotated protein; Belongs to the UPF0761 family. (278 aa)
CHR53_07845Unannotated protein. (405 aa)
yhaMUnannotated protein; Shows a 3'-5' exoribonuclease activity. (316 aa)
CHR53_07950Unannotated protein. (244 aa)
addBUnannotated protein; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. (1159 aa)
addAUnannotated protein; ATP-dependent DNA helicase. (1258 aa)
rnj-2Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. (555 aa)
CHR53_09410Unannotated protein. (291 aa)
rncUnannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (243 aa)
rnhBUnannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (261 aa)
polCUnannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1441 aa)
rnj-3Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. (555 aa)
rnyUnannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (519 aa)
rnz-2Unannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. (278 aa)
CHR53_10075Unannotated protein. (287 aa)
CHR53_10100Unannotated protein. (277 aa)
sbcDUnannotated protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (382 aa)
CHR53_10765Unannotated protein. (1045 aa)
CHR53_10885Unannotated protein. (508 aa)
GCA_001636315_05446Unannotated protein. (299 aa)
GCA_001636315_05546Unannotated protein. (444 aa)
GCA_001636315_05547Unannotated protein. (595 aa)
CHR53_15750Unannotated protein. (191 aa)
Your Current Organism:
Bacillus mesonae
NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985
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