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| | CHR53_18870 | Unannotated protein. (78 aa) |
| | CHR53_19035 | Unannotated protein. (196 aa) |
| | CHR53_19070 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa) |
| | CHR53_19100 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (245 aa) |
| | sigF | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (252 aa) |
| | rnz | Unannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (307 aa) |
| | nusB | Unannotated protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (129 aa) |
| | efp | Unannotated protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (185 aa) |
| | lipM | Unannotated protein; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domain of GcvH, an intermediate carrier during protein lipoylation. (278 aa) |
| | CHR53_19705 | Unannotated protein. (133 aa) |
| | rpmG | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | CHR53_19860 | Unannotated protein. (226 aa) |
| | CHR53_19985 | Unannotated protein. (244 aa) |
| | sigA | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (375 aa) |
| | glyQS | Unannotated protein; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (460 aa) |
| | ybeY | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (156 aa) |
| | rpsU | Unannotated protein; Belongs to the bacterial ribosomal protein bS21 family. (57 aa) |
| | CHR53_20105 | Unannotated protein. (457 aa) |
| | CHR53_20110 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (249 aa) |
| | lepA | Unannotated protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (611 aa) |
| | rpsT | Unannotated protein; Binds directly to 16S ribosomal RNA. (86 aa) |
| | CHR53_20220 | Unannotated protein. (96 aa) |
| | sigK | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (238 aa) |
| | paaX | Unannotated protein. (293 aa) |
| | CHR53_20405 | Unannotated protein. (216 aa) |
| | CHR53_20420 | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (138 aa) |
| | alaS | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (879 aa) |
| | GCA_001636315_00953 | Unannotated protein. (331 aa) |
| | mnmA | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (372 aa) |
| | CHR53_20515 | Unannotated protein; Belongs to the UPF0176 family. (324 aa) |
| | CHR53_20535 | Unannotated protein. (255 aa) |
| | aspS | Unannotated protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (589 aa) |
| | hisS | Unannotated protein. (423 aa) |
| | tgt | Unannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...] (379 aa) |
| | rpmA | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. (97 aa) |
| | rplU | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa) |
| | CHR53_20700 | Unannotated protein. (483 aa) |
| | CHR53_20775 | Unannotated protein. (251 aa) |
| | valS | Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (880 aa) |
| | CHR53_20935 | Unannotated protein. (169 aa) |
| | rph | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (271 aa) |
| | pheT | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (804 aa) |
| | pheS | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (345 aa) |
| | CHR53_21095 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (250 aa) |
| | rplT | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa) |
| | rpmI | Unannotated protein; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) |
| | infC | Unannotated protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (186 aa) |
| | thrS | Unannotated protein; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (644 aa) |
| | thiI | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (402 aa) |
| | rpsD | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (200 aa) |
| | tyrS | Unannotated protein; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (417 aa) |
| | trmB | Unannotated protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (220 aa) |
| | CHR53_21615 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (239 aa) |
| | CHR53_21640 | Unannotated protein. (101 aa) |
| | leuS | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (805 aa) |
| | CHR53_22040 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. (79 aa) |
| | CHR53_22510 | Unannotated protein. (132 aa) |
| | lipA | Unannotated protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (307 aa) |
| | CHR53_22790 | Unannotated protein. (118 aa) |
| | gcvH | Unannotated protein; Is also involved in protein lipoylation via its role as an octanoyl/lipoyl carrier protein intermediate; Belongs to the GcvH family. (127 aa) |
| | smpB | Unannotated protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (155 aa) |
| | rpoN | Unannotated protein. (440 aa) |
| | GCA_001636315_01579 | Unannotated protein. (327 aa) |
| | CHR53_24580 | Unannotated protein; Belongs to the sigma-70 factor family. (239 aa) |
| | CHR53_24780 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (159 aa) |
| | GCA_001636315_02196 | Unannotated protein. (274 aa) |
| | CHR53_26820 | Unannotated protein; Belongs to the sigma-70 factor family. (255 aa) |
| | CHR53_26870 | Unannotated protein. (179 aa) |
| | CHR53_27110 | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (349 aa) |
| | prfA | Unannotated protein; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (357 aa) |
| | rpmE | Unannotated protein; Binds the 23S rRNA. (68 aa) |
| | rho | Unannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (421 aa) |
| | rpoE | Unannotated protein; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. (189 aa) |
| | lipL | Unannotated protein; Catalyzes the amidotransfer (transamidation) of the octanoyl moiety from octanoyl-GcvH to the lipoyl domain of the E2 subunit of lipoate-dependent enzymes; Belongs to the octanoyltransferase LipL family. (284 aa) |
| | CHR53_27370 | Unannotated protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (271 aa) |
| | CHR53_27485 | Unannotated protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (158 aa) |
| | CHR53_27925 | Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (235 aa) |
| | rlmH | Unannotated protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (159 aa) |
| | CHR53_27965 | Unannotated protein. (264 aa) |
| | rplI | Unannotated protein; Binds to the 23S rRNA. (148 aa) |
| | rpsR | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (79 aa) |
| | rpsF | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. (95 aa) |
| | rsmG | Unannotated protein; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (238 aa) |
| | mnmG | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (631 aa) |
| | mnmE | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (461 aa) |
| | rnpA | Unannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (118 aa) |
| | serS | Unannotated protein; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (426 aa) |
| | tadA | Unannotated protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (171 aa) |
| | rsmI | Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (292 aa) |
| | metG | Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (654 aa) |
| | rnmV | Unannotated protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (187 aa) |
| | rsmA | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (292 aa) |
| | rplY | Unannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (211 aa) |
| | pth | Unannotated protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (206 aa) |
| | CHR53_00365 | Unannotated protein. (143 aa) |
| | tilS | Unannotated protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (463 aa) |
| | CHR53_00435 | Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (333 aa) |
| | lysS | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. (494 aa) |
| | gltX | Unannotated protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). (485 aa) |
| | cysS | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (465 aa) |
| | mrnC | Unannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (141 aa) |
| | CHR53_00590 | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (247 aa) |
| | CHR53_00600 | Unannotated protein; Belongs to the sigma-70 factor family. (216 aa) |
| | nusG | Unannotated protein; Participates in transcription elongation, termination and antitermination. (194 aa) |
| | GCA_001636315_02670 | Unannotated protein. (141 aa) |
| | rplA | Unannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa) |
| | rplJ | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa) |
| | CHR53_15900 | Unannotated protein. (512 aa) |
| | rpmG-2 | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | CHR53_15310 | Unannotated protein; Belongs to the amidase family. (468 aa) |
| | GCA_001636315_05506 | Unannotated protein. (194 aa) |
| | CHR53_15130 | Unannotated protein. (117 aa) |
| | CHR53_14920 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (232 aa) |
| | lepB-4 | Unannotated protein; Belongs to the peptidase S26 family. (182 aa) |
| | CHR53_14755 | Unannotated protein; Belongs to the sigma-70 factor family. (308 aa) |
| | CHR53_14740 | Unannotated protein. (174 aa) |
| | CHR53_14405 | Unannotated protein; Belongs to the sigma-70 factor family. (288 aa) |
| | CHR53_14375 | Unannotated protein. (153 aa) |
| | CHR53_14245 | Unannotated protein; Belongs to the amidase family. (467 aa) |
| | CHR53_13410 | Unannotated protein. (99 aa) |
| | CHR53_13405 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. (74 aa) |
| | selA | Unannotated protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (469 aa) |
| | CHR53_12715 | Unannotated protein. (516 aa) |
| | CHR53_12660 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. (191 aa) |
| | CHR53_12500 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa) |
| | CHR53_12245 | Unannotated protein. (651 aa) |
| | CHR53_12000 | Unannotated protein; Belongs to the amidase family. (518 aa) |
| | CHR53_11770 | Unannotated protein. (542 aa) |
| | proS | Unannotated protein; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (476 aa) |
| | selB | Unannotated protein. (626 aa) |
| | miaA | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (319 aa) |
| | CHR53_10290 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. (75 aa) |
| | CHR53_10280 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. (226 aa) |
| | CHR53_10275 | Unannotated protein. (119 aa) |
| | CHR53_10250 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. (647 aa) |
| | CHR53_10120 | Unannotated protein. (184 aa) |
| | CHR53_10100 | Unannotated protein. (277 aa) |
| | CHR53_10075 | Unannotated protein. (287 aa) |
| | rnz-2 | Unannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. (278 aa) |
| | miaB | Unannotated protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (514 aa) |
| | rnj-3 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. (555 aa) |
| | pnp | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (705 aa) |
| | rpsO | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | truB | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (306 aa) |
| | rbfA | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (123 aa) |
| | infB | Unannotated protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (775 aa) |
| | nusA | Unannotated protein; Participates in both transcription termination and antitermination. (373 aa) |
| | frr | Unannotated protein; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (185 aa) |
| | tsf | Unannotated protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (294 aa) |
| | rpsB | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. (234 aa) |
| | trmFO | Unannotated protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (435 aa) |
| | lepB-3 | Unannotated protein; Belongs to the peptidase S26 family. (185 aa) |
| | rplS | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (114 aa) |
| | trmD | Unannotated protein; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (246 aa) |
| | rimM | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (172 aa) |
| | rpsP | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (90 aa) |
| | rnc | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (243 aa) |
| | rpmB | Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (62 aa) |
| | rlmN | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (363 aa) |
| | CHR53_09450 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (449 aa) |
| | fmt | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (315 aa) |
| | def-2 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (161 aa) |
| | rpoZ | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (73 aa) |
| | CHR53_09410 | Unannotated protein. (291 aa) |
| | CHR53_09400 | Unannotated protein. (570 aa) |
| | pyrR | Unannotated protein; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. (180 aa) |
| | CHR53_09345 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (303 aa) |
| | ileS | Unannotated protein; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (923 aa) |
| | sigG | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (259 aa) |
| | CHR53_09285 | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (239 aa) |
| | mraW-2 | Unannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (310 aa) |
| | tmcAL | Unannotated protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34. (405 aa) |
| | rsmD | Unannotated protein. (186 aa) |
| | def | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (184 aa) |
| | CHR53_08870 | Unannotated protein; Belongs to the UPF0356 family. (69 aa) |
| | rnj-2 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. (555 aa) |
| | CHR53_08710 | Unannotated protein. (204 aa) |
| | sigI | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily. (248 aa) |
| | prfC | Unannotated protein; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (528 aa) |
| | CHR53_08475 | Unannotated protein. (187 aa) |
| | CHR53_08375 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (300 aa) |
| | trpS | Unannotated protein; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (329 aa) |
| | CHR53_08135 | Unannotated protein. (112 aa) |
| | lepB-2 | Unannotated protein; Belongs to the peptidase S26 family. (184 aa) |
| | CHR53_07970 | Unannotated protein. (424 aa) |
| | CHR53_07955 | Unannotated protein. (329 aa) |
| | CHR53_07950 | Unannotated protein. (244 aa) |
| | CHR53_07685 | Unannotated protein. (186 aa) |
| | CHR53_07620 | Unannotated protein. (412 aa) |
| | CHR53_07555 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (304 aa) |
| | CHR53_07500 | Unannotated protein. (160 aa) |
| | CHR53_07495 | Unannotated protein. (279 aa) |
| | trmL-2 | Unannotated protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (163 aa) |
| | queG | Unannotated protein. (376 aa) |
| | CHR53_06915 | Unannotated protein. (224 aa) |
| | rplM | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (145 aa) |
| | truA | Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (250 aa) |
| | rplQ | Unannotated protein. (120 aa) |
| | rpoA | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa) |
| | rpsK | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpsM | Unannotated protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (121 aa) |
| | rpmJ | Unannotated protein; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | infA | Unannotated protein; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa) |
| | rplO | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | Unannotated protein. (60 aa) |
| | rpsE | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (166 aa) |
| | rplR | Unannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa) |
| | rplF | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa) |
| | rpsH | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsZ | Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rplE | Unannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rplX | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (102 aa) |
| | rplN | Unannotated protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (87 aa) |
| | rpmC | Unannotated protein; Belongs to the universal ribosomal protein uL29 family. (66 aa) |
| | rplP | Unannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (144 aa) |
| | rpsC | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (218 aa) |
| | rplV | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (113 aa) |
| | rpsS | Unannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (276 aa) |
| | rplW | Unannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (94 aa) |
| | rplD | Unannotated protein; Forms part of the polypeptide exit tunnel. (207 aa) |
| | rplC | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (208 aa) |
| | rpsJ | Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | tuf | Unannotated protein; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (395 aa) |
| | fusA | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (693 aa) |
| | rpsG | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (140 aa) |
| | CHR53_00655 | Unannotated protein. (82 aa) |
| | rpoC | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1199 aa) |
| | rpoB | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1186 aa) |
| | rplL | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (120 aa) |
| | CHR53_06135 | Unannotated protein. (124 aa) |
| | CHR53_06030 | Unannotated protein. (482 aa) |
| | glnS | Unannotated protein. (549 aa) |
| | CHR53_05895 | Unannotated protein; Belongs to the amidase family. (499 aa) |
| | CHR53_05810 | Unannotated protein. (185 aa) |
| | CHR53_05805 | Unannotated protein. (406 aa) |
| | CHR53_05555 | Unannotated protein. (184 aa) |
| | CHR53_05340 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa) |
| | lepB | Unannotated protein; Belongs to the peptidase S26 family. (173 aa) |
| | CHR53_05205 | Unannotated protein. (444 aa) |
| | CHR53_05200 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa) |
| | CHR53_05060 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa) |
| | CHR53_04960 | Unannotated protein. (113 aa) |
| | CHR53_04955 | Unannotated protein. (170 aa) |
| | trmL | Unannotated protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (156 aa) |
| | CHR53_04080 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (160 aa) |
| | rnj | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. (557 aa) |
| | CHR53_03770 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa) |
| | CHR53_03440 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa) |
| | CHR53_03375 | Unannotated protein. (209 aa) |
| | CHR53_02830 | Unannotated protein. (689 aa) |
| | CHR53_02790 | Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (327 aa) |
| | CHR53_02690 | Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (457 aa) |
| | CHR53_02630 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa) |
| | gatB | Unannotated protein; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (475 aa) |
| | gatA | Unannotated protein; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (485 aa) |
| | gatC | Unannotated protein; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (97 aa) |
| | CHR53_02515 | Unannotated protein. (170 aa) |
| | CHR53_02130 | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa) |
| | CHR53_02125 | Unannotated protein. (373 aa) |
| | CHR53_01755 | Unannotated protein. (241 aa) |
| | CHR53_01735 | Unannotated protein. (639 aa) |
| | tsaD | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (348 aa) |
| | rimI | Unannotated protein; Acetylates the N-terminal alanine of ribosomal protein S18. (149 aa) |
| | tsaB | Unannotated protein. (232 aa) |
| | CHR53_01715 | Unannotated protein. (151 aa) |
| | argS | Unannotated protein. (564 aa) |
| | CHR53_01330 | Unannotated protein. (248 aa) |
| | sigW | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa) |
| | rpsI | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | CHR53_06220 | Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (464 aa) |
| | CHR53_16090 | Unannotated protein. (302 aa) |
| | CHR53_16240 | Unannotated protein. (488 aa) |
| | CHR53_17300 | Unannotated protein. (183 aa) |
| | asnS | Unannotated protein. (463 aa) |
| | CHR53_17920 | Unannotated protein. (539 aa) |
| | CHR53_18010 | Unannotated protein. (353 aa) |
| | CHR53_18310 | Unannotated protein. (189 aa) |
| | CHR53_18420 | Unannotated protein. (629 aa) |
| | CHR53_18570 | Unannotated protein. (77 aa) |
| | CHR53_18575 | Unannotated protein. (69 aa) |
| | CHR53_18595 | Unannotated protein; Belongs to the methyltransferase superfamily. (384 aa) |
| | birA | Unannotated protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (325 aa) |
| | cca | Unannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. (399 aa) |
| | CHR53_18925 | Unannotated protein. (379 aa) |
