(13 nodes) Branched-chain amino acid transport network (Bacillus mesonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHR53_13655	Unannotated protein. (117 aa)
	livF	Unannotated protein. (232 aa)
	CHR53_16400	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
	brnQ	Unannotated protein; Component of the transport system for branched-chain amino acids. (459 aa)
	CHR53_24805	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (323 aa)
	CHR53_24815	Unannotated protein. (238 aa)
	CHR53_27495	Unannotated protein. (235 aa)
	CHR53_27505	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
	brnQ-3	Unannotated protein; Component of the transport system for branched-chain amino acids. (450 aa)
	brnQ-4	Unannotated protein; Component of the transport system for branched-chain amino acids. (442 aa)
	brnQ-2	Unannotated protein; Component of the transport system for branched-chain amino acids. (446 aa)
	CHR53_10040	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (352 aa)
	livF-2	Unannotated protein. (246 aa)

Your Current Organism:

Bacillus mesonae

NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHR53_10040	CHR53_16400	GCA_001636315_04443	GCA_001636315_00105	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.833
CHR53_10040	CHR53_24805	GCA_001636315_04443	GCA_001636315_01860	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.842
CHR53_10040	CHR53_24815	GCA_001636315_04443	GCA_001636315_01862	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.993
CHR53_10040	CHR53_27495	GCA_001636315_04443	GCA_001636315_02417	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.993
CHR53_10040	CHR53_27505	GCA_001636315_04443	GCA_001636315_02419	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.842
CHR53_10040	livF	GCA_001636315_04443	GCA_001636315_00103	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.991
CHR53_10040	livF-2	GCA_001636315_04443	GCA_001636315_04445	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.998
CHR53_13655	CHR53_24815	GCA_001636315_05169	GCA_001636315_01862	Unannotated protein.	Unannotated protein.	0.601
CHR53_13655	CHR53_27495	GCA_001636315_05169	GCA_001636315_02417	Unannotated protein.	Unannotated protein.	0.601
CHR53_13655	livF	GCA_001636315_05169	GCA_001636315_00103	Unannotated protein.	Unannotated protein.	0.601
CHR53_13655	livF-2	GCA_001636315_05169	GCA_001636315_04445	Unannotated protein.	Unannotated protein.	0.601
CHR53_16400	CHR53_10040	GCA_001636315_00105	GCA_001636315_04443	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.833
CHR53_16400	CHR53_24815	GCA_001636315_00105	GCA_001636315_01862	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.991
CHR53_16400	CHR53_27495	GCA_001636315_00105	GCA_001636315_02417	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.991
CHR53_16400	livF	GCA_001636315_00105	GCA_001636315_00103	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.997
CHR53_16400	livF-2	GCA_001636315_00105	GCA_001636315_04445	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.990
CHR53_24805	CHR53_10040	GCA_001636315_01860	GCA_001636315_04443	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.842
CHR53_24805	CHR53_24815	GCA_001636315_01860	GCA_001636315_01862	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.997
CHR53_24805	CHR53_27495	GCA_001636315_01860	GCA_001636315_02417	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.988
CHR53_24805	livF	GCA_001636315_01860	GCA_001636315_00103	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.985