(26 nodes) Intramolecular transferase activity network (Bacillus mesonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

Your Input:
	menF	Unannotated protein; Catalyzes the conversion of chorismate to isochorismate. (466 aa)
	gpmI	Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family. (510 aa)
	deoB-2	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (392 aa)
	icmF	Unannotated protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. (1083 aa)
	purE	Unannotated protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). (162 aa)
	shc-2	Unannotated protein. (634 aa)
	hemL-2	Unannotated protein. (431 aa)
	glmM	Unannotated protein; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. (449 aa)
	shc	Unannotated protein. (620 aa)
	ablA	Unannotated protein. (473 aa)
	aroH	Unannotated protein; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. (123 aa)
	CHR53_19100	Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (245 aa)
	deoB	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (394 aa)
	CHR53_19395	Unannotated protein. (732 aa)
	CHR53_21615	Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (239 aa)
	CHR53_22265	Unannotated protein; Belongs to the RbsD / FucU family. (145 aa)
	truB	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (306 aa)
	CHR53_09345	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (303 aa)
	CHR53_08375	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (300 aa)
	CHR53_07565	Unannotated protein. (577 aa)
	CHR53_07555	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (304 aa)
	CHR53_19400	Unannotated protein. (611 aa)
	pheA	Unannotated protein. (284 aa)
	hemL	Unannotated protein. (428 aa)
	CHR53_27925	Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (235 aa)
	truA	Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (250 aa)

Your Current Organism:

Bacillus mesonae

NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHR53_07555	CHR53_07565	GCA_001636315_03953	GCA_001636315_03955	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein.	0.422
CHR53_07565	CHR53_07555	GCA_001636315_03955	GCA_001636315_03953	Unannotated protein.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.422
CHR53_07565	deoB	GCA_001636315_03955	GCA_001636315_00674	Unannotated protein.	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.916
CHR53_07565	deoB-2	GCA_001636315_03955	GCA_001636315_02050	Unannotated protein.	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.916
CHR53_07565	truA	GCA_001636315_03955	GCA_001636315_02714	Unannotated protein.	Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.472
CHR53_08375	truB	GCA_001636315_04117	GCA_001636315_04383	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.442
CHR53_09345	CHR53_21615	GCA_001636315_04305	GCA_001636315_01205	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Belongs to the pseudouridine synthase RsuA family.	0.413
CHR53_09345	truB	GCA_001636315_04305	GCA_001636315_04383	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.414
CHR53_19395	CHR53_19400	GCA_001636315_00712	GCA_001636315_00713	Unannotated protein.	Unannotated protein.	0.999
CHR53_19395	icmF	GCA_001636315_00712	GCA_001636315_02355	Unannotated protein.	Unannotated protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.	0.998
CHR53_19400	CHR53_19395	GCA_001636315_00713	GCA_001636315_00712	Unannotated protein.	Unannotated protein.	0.999
CHR53_19400	icmF	GCA_001636315_00713	GCA_001636315_02355	Unannotated protein.	Unannotated protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.	0.998
CHR53_21615	CHR53_09345	GCA_001636315_01205	GCA_001636315_04305	Unannotated protein; Belongs to the pseudouridine synthase RsuA family.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.413
CHR53_21615	truB	GCA_001636315_01205	GCA_001636315_04383	Unannotated protein; Belongs to the pseudouridine synthase RsuA family.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.408
aroH	menF	GCA_001636315_00603	GCA_001636315_01243	Unannotated protein; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.	Unannotated protein; Catalyzes the conversion of chorismate to isochorismate.	0.800
aroH	pheA	GCA_001636315_00603	GCA_001636315_01014	Unannotated protein; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.	Unannotated protein.	0.948
deoB	CHR53_07565	GCA_001636315_00674	GCA_001636315_03955	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	Unannotated protein.	0.916
deoB	deoB-2	GCA_001636315_00674	GCA_001636315_02050	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.901
deoB-2	CHR53_07565	GCA_001636315_02050	GCA_001636315_03955	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	Unannotated protein.	0.916
deoB-2	deoB	GCA_001636315_02050	GCA_001636315_00674	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	Unannotated protein; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.	0.901