(46 nodes) ATP-binding cassette (ABC) transporter complex network (Bacillus mesonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHR53_10165	Unannotated protein. (265 aa)
	GCA_001636315_01279	Unannotated protein. (556 aa)
	GCA_001636315_01285	Unannotated protein. (549 aa)
	CHR53_22915	Unannotated protein. (232 aa)
	CHR53_14795	Unannotated protein. (249 aa)
	CHR53_16925	Unannotated protein; Belongs to the ABC transporter superfamily. (331 aa)
	GCA_001636315_00220	Unannotated protein. (122 aa)
	CHR53_16960	Unannotated protein. (170 aa)
	CHR53_19370	Unannotated protein. (219 aa)
	CHR53_19945	Unannotated protein. (290 aa)
	CHR53_23355	Unannotated protein. (353 aa)
	ehuD	Unannotated protein. (236 aa)
	ehuC	Unannotated protein. (156 aa)
	CHR53_02995	Unannotated protein. (221 aa)
	CHR53_03065	Unannotated protein. (219 aa)
	CHR53_03105	Unannotated protein. (233 aa)
	CHR53_03110	Unannotated protein. (235 aa)
	potA	Unannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (367 aa)
	potA-2	Unannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (369 aa)
	CHR53_05610	Unannotated protein. (426 aa)
	CHR53_05615	Unannotated protein. (429 aa)
	CHR53_05780	Unannotated protein. (218 aa)
	CHR53_06225	Unannotated protein. (323 aa)
	CHR53_06230	Unannotated protein. (504 aa)
	CHR53_06295	Unannotated protein. (575 aa)
	GCA_001636315_01602	Unannotated protein. (276 aa)
	CHR53_23760	Unannotated protein. (283 aa)
	CHR53_23765	Unannotated protein. (304 aa)
	CHR53_25915	Unannotated protein. (533 aa)
	CHR53_25990	Unannotated protein. (523 aa)
	CHR53_26100	Unannotated protein. (520 aa)
	GCA_001636315_02135	Unannotated protein. (538 aa)
	GCA_001636315_02484	Unannotated protein. (239 aa)
	GCA_001636315_02797	Unannotated protein. (524 aa)
	CHR53_02215	Unannotated protein; Belongs to the ABC transporter superfamily. (337 aa)
	CHR53_02330	Unannotated protein. (388 aa)
	CHR53_02335	Unannotated protein. (375 aa)
	CHR53_06515	Unannotated protein. (539 aa)
	CHR53_12625	Unannotated protein. (220 aa)
	CHR53_12465	Unannotated protein; Belongs to the ABC transporter superfamily. (344 aa)
	CHR53_10910	Unannotated protein. (544 aa)
	CHR53_07760	Unannotated protein; Belongs to the ABC transporter superfamily. (366 aa)
	CHR53_08245	Unannotated protein. (571 aa)
	CHR53_08270	Unannotated protein. (549 aa)
	CHR53_19950	Unannotated protein. (257 aa)
	CHR53_13695	Unannotated protein. (219 aa)

Your Current Organism:

Bacillus mesonae

NCBI taxonomy Id: 1193713
Other names: B. mesonae, Bacillus mesonae Liu et al. 2014, Bacillus sp. FJAT-13985, CGMCC1.12238, DSM 25968, strain FJAT-13985

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHR53_02215	CHR53_06230	GCA_001636315_02965	GCA_001636315_03779	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein.	0.404
CHR53_02215	CHR53_06295	GCA_001636315_02965	GCA_001636315_03792	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein.	0.461
CHR53_02215	CHR53_12465	GCA_001636315_02965	GCA_001636315_04926	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein; Belongs to the ABC transporter superfamily.	0.448
CHR53_02215	CHR53_19945	GCA_001636315_02965	GCA_001636315_00843	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein.	0.401
CHR53_02215	potA	GCA_001636315_02965	GCA_001636315_03314	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.417
CHR53_02215	potA-2	GCA_001636315_02965	GCA_001636315_03627	Unannotated protein; Belongs to the ABC transporter superfamily.	Unannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.431
CHR53_02330	CHR53_02335	GCA_001636315_02987	GCA_001636315_02988	Unannotated protein.	Unannotated protein.	0.874
CHR53_02335	CHR53_02330	GCA_001636315_02988	GCA_001636315_02987	Unannotated protein.	Unannotated protein.	0.874
CHR53_02335	CHR53_23355	GCA_001636315_02988	GCA_001636315_01568	Unannotated protein.	Unannotated protein.	0.540
CHR53_02995	CHR53_03065	GCA_001636315_03121	GCA_001636315_03137	Unannotated protein.	Unannotated protein.	0.467
CHR53_02995	CHR53_03105	GCA_001636315_03121	GCA_001636315_03145	Unannotated protein.	Unannotated protein.	0.508
CHR53_02995	CHR53_03110	GCA_001636315_03121	GCA_001636315_03146	Unannotated protein.	Unannotated protein.	0.522
CHR53_02995	CHR53_05780	GCA_001636315_03121	GCA_001636315_03684	Unannotated protein.	Unannotated protein.	0.422
CHR53_02995	CHR53_06295	GCA_001636315_03121	GCA_001636315_03792	Unannotated protein.	Unannotated protein.	0.402
CHR53_02995	CHR53_13695	GCA_001636315_03121	GCA_001636315_05176	Unannotated protein.	Unannotated protein.	0.422
CHR53_02995	CHR53_19370	GCA_001636315_03121	GCA_001636315_00707	Unannotated protein.	Unannotated protein.	0.448
CHR53_02995	CHR53_19945	GCA_001636315_03121	GCA_001636315_00843	Unannotated protein.	Unannotated protein.	0.461
CHR53_02995	CHR53_22915	GCA_001636315_03121	GCA_001636315_01482	Unannotated protein.	Unannotated protein.	0.463
CHR53_02995	ehuC	GCA_001636315_03121	GCA_001636315_03048	Unannotated protein.	Unannotated protein.	0.488
CHR53_02995	ehuD	GCA_001636315_03121	GCA_001636315_03047	Unannotated protein.	Unannotated protein.	0.492