(5 nodes) Mixed, incl. Thiamine-binding protein, and 3-5 ssDNA/RNA exonuclease TatD-like network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_08185	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	A361_08190	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	A361_08195	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	A361_08200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	A361_08205	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

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node1	node2	node1 annotation	node2 annotation	score
A361_08185	A361_08190	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
A361_08185	A361_08195	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
A361_08185	A361_08200	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
A361_08185	A361_08205	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
A361_08190	A361_08185	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
A361_08190	A361_08195	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
A361_08190	A361_08200	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
A361_08190	A361_08205	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
A361_08195	A361_08185	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
A361_08195	A361_08190	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
A361_08195	A361_08200	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
A361_08195	A361_08205	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
A361_08200	A361_08185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
A361_08200	A361_08190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
A361_08200	A361_08195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
A361_08200	A361_08205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
A361_08205	A361_08185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
A361_08205	A361_08190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
A361_08205	A361_08195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
A361_08205	A361_08200	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951