13 items (Bacillus oceanisediminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hutH	Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
	A361_12940	Histidine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	A361_12945	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (326 aa)
	hutI	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	hutU	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (553 aa)
	A361_12960	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	A361_12965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	A361_16160	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	A361_16165	X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	A361_16170	Sodium:proline symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (468 aa)
	A361_16175	Aryldialkylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	A361_16185	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
	A361_16190	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A361_12940	A361_12945	A361_12940	A361_12945	Histidine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.646
A361_12940	hutI	A361_12940	A361_12950	Histidine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
A361_12940	hutU	A361_12940	A361_12955	Histidine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.475
A361_12945	A361_12940	A361_12945	A361_12940	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Histidine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
A361_12945	A361_12960	A361_12945	A361_12960	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
A361_12945	hutH	A361_12945	A361_05540	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
A361_12945	hutI	A361_12945	A361_12950	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
A361_12945	hutU	A361_12945	A361_12955	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.875
A361_12960	A361_12945	A361_12960	A361_12945	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.492
A361_12960	A361_12965	A361_12960	A361_12965	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
A361_12960	hutI	A361_12960	A361_12950	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
A361_12960	hutU	A361_12960	A361_12955	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.548
A361_12965	A361_12960	A361_12965	A361_12960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
A361_16160	A361_16165	A361_16160	A361_16165	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
A361_16160	A361_16170	A361_16160	A361_16170	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proline symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.617
A361_16160	A361_16175	A361_16160	A361_16175	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aryldialkylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
A361_16160	hutH	A361_16160	A361_05540	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
A361_16160	hutU	A361_16160	A361_12955	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.684
A361_16165	A361_16160	A361_16165	A361_16160	X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
A361_16165	A361_16170	A361_16165	A361_16170	X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proline symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.764