(13 nodes) Mixed, incl. Signal transduction response regulator, citrate/malate metabolism, and Sensor_kinase_SpoOB-type, alpha-helical domain network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_03865	Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	A361_03870	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	A361_03875	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	A361_04880	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	A361_04885	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	A361_04890	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	dctA	Glutamate/aspartate:proton symporter GltP; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (429 aa)
	A361_25725	Citrate:succinate antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	A361_25730	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
	A361_25735	Tripartite tricarboxylate transporter TctB family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	A361_25740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	A361_25745	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	A361_25750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A361_03865	A361_03870	A361_03865	A361_03870	Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
A361_03865	A361_03875	A361_03865	A361_03875	Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
A361_03870	A361_03865	A361_03870	A361_03865	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
A361_03870	A361_03875	A361_03870	A361_03875	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
A361_03870	A361_04885	A361_03870	A361_04885	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
A361_03870	A361_25730	A361_03870	A361_25730	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
A361_03870	A361_25740	A361_03870	A361_25740	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
A361_03870	A361_25750	A361_03870	A361_25750	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
A361_03875	A361_03865	A361_03875	A361_03865	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Citrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
A361_03875	A361_03870	A361_03875	A361_03870	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
A361_03875	A361_04890	A361_03875	A361_04890	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
A361_03875	A361_25730	A361_03875	A361_25730	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
A361_03875	A361_25740	A361_03875	A361_25740	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
A361_03875	A361_25745	A361_03875	A361_25745	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
A361_04880	A361_04885	A361_04880	A361_04885	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
A361_04880	A361_04890	A361_04880	A361_04890	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
A361_04880	dctA	A361_04880	A361_04895	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate/aspartate:proton symporter GltP; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	0.420
A361_04885	A361_03870	A361_04885	A361_03870	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
A361_04885	A361_04880	A361_04885	A361_04880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
A361_04885	A361_04890	A361_04885	A361_04890	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997