(7 nodes) Organic phosphonate transport network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_16695	Phosphonate C-P lyase system protein PhnG; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	phnC	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (257 aa)
	A361_12570	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	A361_16645	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	A361_16650	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	phnC-2	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (262 aa)
	A361_16665	Phosphonate C-P lyase system protein PhnL; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A361_12570	A361_16645	A361_12570	A361_16645	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
A361_12570	A361_16650	A361_12570	A361_16650	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
A361_12570	A361_16665	A361_12570	A361_16665	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate C-P lyase system protein PhnL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
A361_12570	A361_16695	A361_12570	A361_16695	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate C-P lyase system protein PhnG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
A361_12570	phnC	A361_12570	A361_12565	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.991
A361_12570	phnC-2	A361_12570	A361_16655	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.965
A361_16645	A361_12570	A361_16645	A361_12570	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
A361_16645	A361_16650	A361_16645	A361_16650	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
A361_16645	A361_16665	A361_16645	A361_16665	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate C-P lyase system protein PhnL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
A361_16645	A361_16695	A361_16645	A361_16695	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate C-P lyase system protein PhnG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
A361_16645	phnC	A361_16645	A361_12565	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.963
A361_16645	phnC-2	A361_16645	A361_16655	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.993
A361_16650	A361_12570	A361_16650	A361_12570	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
A361_16650	A361_16645	A361_16650	A361_16645	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
A361_16650	A361_16665	A361_16650	A361_16665	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate C-P lyase system protein PhnL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
A361_16650	A361_16695	A361_16650	A361_16695	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate C-P lyase system protein PhnG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
A361_16650	phnC	A361_16650	A361_12565	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.965
A361_16650	phnC-2	A361_16650	A361_16655	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.993
A361_16665	A361_12570	A361_16665	A361_12570	Phosphonate C-P lyase system protein PhnL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
A361_16665	A361_16645	A361_16665	A361_16645	Phosphonate C-P lyase system protein PhnL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873