(5 nodes) Oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_12340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	dapB	4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (267 aa)
	ispH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (316 aa)
	A361_12335	Sulfurylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	A361_12350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A361_12335	A361_12340	Sulfurylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
A361_12335	A361_12350	Sulfurylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
A361_12340	A361_12335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfurylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
A361_12340	A361_12350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
A361_12350	A361_12335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfurylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
A361_12350	A361_12340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983