(35 nodes) Outer membrane-bounded periplasmic space network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

Your Input:
	A361_16510	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	A361_16120	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	A361_15020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	A361_13465	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	A361_13285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (380 aa)
	A361_10285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	A361_08510	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (527 aa)
	A361_08360	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	A361_07980	Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	A361_07535	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	A361_07510	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	A361_06140	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
	A361_05925	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	A361_05860	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	A361_05190	2',3'-cyclic-nucleotide 2'-phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1188 aa)
	A361_04880	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	A361_01215	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	A361_02320	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	A361_02360	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	A361_02645	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (544 aa)
	A361_03150	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	A361_03180	D-xylose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	A361_03535	Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	A361_04670	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	A361_27100	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (667 aa)
	A361_26095	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	A361_25445	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (686 aa)
	A361_25290	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	A361_25190	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	A361_24595	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (483 aa)
	A361_24005	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	A361_18610	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (498 aa)
	A361_17575	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (682 aa)
	A361_16630	Glutathione ABC transporter substrate-binding protein GsiB; With GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	vgb	Virginiamycin B lyase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid. (296 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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node1	node2	node1 annotation	node2 annotation	score
A361_01215	A361_05860	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
A361_01215	A361_05925	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
A361_01215	A361_06140	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
A361_01215	A361_07510	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
A361_01215	A361_07535	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
A361_01215	A361_16120	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
A361_01215	A361_16630	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione ABC transporter substrate-binding protein GsiB; With GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
A361_01215	A361_25290	Oligopeptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
A361_02320	A361_24005	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
A361_02360	A361_24005	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
A361_02645	A361_05190	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	2',3'-cyclic-nucleotide 2'-phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
A361_02645	A361_08510	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	0.928
A361_02645	A361_13285	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	0.969
A361_02645	A361_25445	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	0.925
A361_03150	A361_03180	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-xylose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
A361_03180	A361_03150	D-xylose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
A361_03535	A361_17575	Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.407
A361_03535	A361_27100	Molybdate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.451
A361_04670	A361_24005	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
A361_05190	A361_02645	2',3'-cyclic-nucleotide 2'-phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.	0.905