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A361_26625 A361_26625 A361_01965 A361_01965 A361_05600 A361_05600 A361_07325 A361_07325 A361_08410 A361_08410 A361_08870 A361_08870 A361_09475 A361_09475 A361_11030 A361_11030 A361_11270 A361_11270 A361_11550 A361_11550 A361_11870 A361_11870 A361_12165 A361_12165 A361_12490 A361_12490 A361_13460 A361_13460 A361_14165 A361_14165 xylB xylB mtlD mtlD A361_15675 A361_15675 A361_15735 A361_15735 A361_15990 A361_15990 A361_26640 A361_26640 A361_15995 A361_15995 glcB glcB A361_18235 A361_18235 A361_18385 A361_18385 glpK glpK A361_18400 A361_18400 A361_18790 A361_18790 A361_18930 A361_18930 A361_20020 A361_20020 A361_20835 A361_20835 A361_21525 A361_21525 A361_22180 A361_22180 pfkA pfkA glgA glgA A361_22925 A361_22925 glgC glgC glgB glgB A361_23130 A361_23130 A361_23275 A361_23275 A361_23280 A361_23280 A361_23760 A361_23760 A361_24810 A361_24810 A361_24840 A361_24840 A361_24895 A361_24895 A361_24980 A361_24980 A361_25015 A361_25015 rbsK rbsK glpX glpX A361_26110 A361_26110 A361_26590 A361_26590 A361_26595 A361_26595
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A361_26625GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
A361_01965Isocitrate lyase; Catalyzes the reversible formation of glyoxylate and succinate from isocitrate; glyoxylate bypass pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
A361_05600Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
A361_07325Fatty acid-binding protein DegV; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
A361_08410Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
A361_08870Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
A361_09475Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
A361_11030Glycerol-3-phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
A361_112701-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. (317 aa)
A361_11550Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
A361_11870Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
A361_12165Fatty acid-binding protein DegV; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
A361_12490Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
A361_13460Nitrous oxidase accessory protein NosD; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
A361_14165Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
xylBXylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
mtlDMannitol-1-phosphate 5-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
A361_156756-phosphogluconate dehydrogenase; Similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
A361_15735Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (119 aa)
A361_15990Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
A361_26640Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (468 aa)
A361_15995Glycosyl hydrolase family 32; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family. (496 aa)
glcBMalate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (725 aa)
A361_182351-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. (309 aa)
A361_18385Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (554 aa)
glpKGlycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. (496 aa)
A361_18400Glycerol-3-phosphate responsive antiterminator GlpP; Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA. (181 aa)
A361_18790Fatty acid-binding protein DegV; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
A361_18930Fatty acid-binding protein DegV; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
A361_20020Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (469 aa)
A361_20835Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
A361_21525Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
A361_22180Isocitrate dehydrogenase (NADP(+)); Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
pfkAATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (319 aa)
glgAStarch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (483 aa)
A361_22925Glucose-1-phosphate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
glgCGlucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (381 aa)
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (648 aa)
A361_23130Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (377 aa)
A361_23275Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
A361_23280Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
A361_23760D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (320 aa)
A361_24810Fatty acid-binding protein DegV; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
A361_24840Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)
A361_24895Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
A361_24980Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
A361_25015Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
rbsKRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (308 aa)
glpXType II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
A361_261102-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
A361_26590Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. (313 aa)
A361_26595Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family. (479 aa)
Your Current Organism:
Bacillus oceanisediminis
NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691
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