STRINGSTRING
A361_25635 A361_25635 A361_00130 A361_00130 A361_00360 A361_00360 A361_01240 A361_01240 cshA cshA A361_01915 A361_01915 A361_01955 A361_01955 A361_02340 A361_02340 A361_02645 A361_02645 A361_02730 A361_02730 A361_03240 A361_03240 A361_03275 A361_03275 A361_03330 A361_03330 A361_03390 A361_03390 A361_03405 A361_03405 A361_03690 A361_03690 A361_03735 A361_03735 A361_03860 A361_03860 A361_04175 A361_04175 kynU kynU kynB kynB kynA kynA A361_04760 A361_04760 A361_04785 A361_04785 A361_04815 A361_04815 A361_05190 A361_05190 allB allB A361_05875 A361_05875 A361_07040 A361_07040 A361_08510 A361_08510 A361_09385 A361_09385 rnhB rnhB pnp pnp rny rny ade ade A361_12335 A361_12335 A361_12340 A361_12340 A361_12345 A361_12345 A361_12350 A361_12350 A361_12360 A361_12360 A361_12375 A361_12375 A361_12380 A361_12380 ade-2 ade-2 A361_12430 A361_12430 A361_12745 A361_12745 A361_13285 A361_13285 A361_13755 A361_13755 A361_15200 A361_15200 A361_15220 A361_15220 A361_16075 A361_16075 A361_16740 A361_16740 A361_16930 A361_16930 A361_16935 A361_16935 A361_16965 A361_16965 A361_17180 A361_17180 A361_17350 A361_17350 A361_17515 A361_17515 A361_17545 A361_17545 A361_18360 A361_18360 deoD deoD A361_18925 A361_18925 A361_19350 A361_19350 deoB deoB xseB xseB xseA xseA A361_20980 A361_20980 cshB cshB A361_21095 A361_21095 deoC deoC mtnN mtnN A361_21615 A361_21615 A361_21895 A361_21895 A361_26245 A361_26245 rph rph rnhC rnhC A361_22370 A361_22370 A361_22550 A361_22550 A361_24500 A361_24500 csrA csrA A361_25325 A361_25325 A361_25405 A361_25405 A361_25420 A361_25420 A361_25445 A361_25445
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A361_25635hydroxymyristoyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
A361_00130Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
A361_00360MazG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
A361_01240Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
cshADEAD/DEAH box helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. (492 aa)
A361_01915Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)
A361_01955Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
A361_02340Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
A361_02645Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (544 aa)
A361_02730D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
A361_03240Class A beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
A361_03275Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
A361_03330Short-chain dehydrogenase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (132 aa)
A361_03390Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
A361_03405Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
A361_03690Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
A361_03735Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
A361_03860JEMB protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
A361_04175Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (422 aa)
kynBArylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. (209 aa)
kynATryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (283 aa)
A361_04760Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
A361_04785Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
A361_04815Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
A361_051902',3'-cyclic-nucleotide 2'-phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1188 aa)
allBAllantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family. (463 aa)
A361_05875Allantoate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
A361_07040Signal transduction protein TRAP; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
A361_08510Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (527 aa)
A361_09385Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (259 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (706 aa)
rnyRibonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (520 aa)
adePeptidoglycan hydrolase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (578 aa)
A361_12335Sulfurylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
A361_12340Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
A361_12345Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (762 aa)
A361_12350Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
A361_12360Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
A361_12375Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
A361_12380Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
ade-2Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (603 aa)
A361_12430Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
A361_12745Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
A361_13285Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (380 aa)
A361_13755Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
A361_15200Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
A361_15220Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
A361_16075Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
A361_16740Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
A361_16930Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (322 aa)
A361_16935Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (104 aa)
A361_16965tRNA-specific adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
A361_171805'-methylthioadenosine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
A361_17350Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)
A361_17515Serine-pyruvate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
A361_17545Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family. (392 aa)
A361_18360DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (463 aa)
deoDPurine nucleoside phosphorylase DeoD-type; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
A361_18925Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
A361_19350Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (394 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (77 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (446 aa)
A361_20980Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'(3')-deoxyribonucleotidase family. (191 aa)
cshBDEAD/DEAH box helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. (436 aa)
A361_21095Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (132 aa)
deoC2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (223 aa)
mtnN5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (232 aa)
A361_21615Nicotinate-nucleotide diphosphorylase (carboxylating); Catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NadC/ModD family. (278 aa)
A361_21895Non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (203 aa)
A361_26245Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (256 aa)
rnhCRibonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (312 aa)
A361_22370Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
A361_22550Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
A361_24500Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family. (402 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (76 aa)
A361_25325Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
A361_25405Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
A361_25420Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
A361_25445Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (686 aa)
Your Current Organism:
Bacillus oceanisediminis
NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.