(50 nodes) ABC transporter type 1, transmembrane domain MetI-like network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_16645	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	A361_16620	Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	A361_16115	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	A361_16110	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	A361_14715	ABC transporter permease; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	A361_14520	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	A361_13230	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	A361_13225	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	A361_12570	Phosphonate ABC transporter, permease protein PhnE; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	A361_11520	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	A361_11515	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	A361_11375	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	A361_11220	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	A361_11215	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	A361_08195	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	A361_08175	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	A361_08170	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	A361_07545	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	A361_07540	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	A361_07520	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	A361_07515	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	A361_07290	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	A361_07285	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	A361_06330	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	A361_06325	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	A361_06150	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	A361_06145	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	A361_05920	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	A361_05915	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	A361_01205	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	A361_01200	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	A361_25365	Protein lplB; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	A361_25360	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	A361_25180	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa)
	A361_24510	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	A361_24070	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	A361_23905	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	A361_22790	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	A361_21810	Cystine transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	A361_20915	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (318 aa)
	A361_20910	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	A361_20065	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	A361_19210	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	A361_19205	Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (802 aa)
	A361_19190	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	A361_19185	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	A361_18150	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	A361_17645	Molybdenum ABC transporter permease subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (222 aa)
	A361_16650	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	A361_16625	Glutathione ABC transporter permease GsiC; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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node1	node2	node1 annotation	node2 annotation	score
A361_01200	A361_01205	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
A361_01200	A361_05920	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
A361_01200	A361_06150	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
A361_01200	A361_07520	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
A361_01200	A361_07545	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
A361_01200	A361_16110	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
A361_01200	A361_16620	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
A361_01200	A361_19190	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
A361_01205	A361_01200	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
A361_01205	A361_05915	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
A361_01205	A361_06145	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
A361_01205	A361_07515	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
A361_01205	A361_07540	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
A361_01205	A361_16115	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
A361_01205	A361_16625	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione ABC transporter permease GsiC; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
A361_01205	A361_19185	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
A361_01205	A361_19210	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
A361_05915	A361_01205	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
A361_05915	A361_05920	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
A361_05915	A361_06150	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899